Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_J16
         (453 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-23|CAB60377.3|  770|Caenorhabditis elegans Hypothetical...    32   0.17 
U23514-11|AAM48531.1|  287|Caenorhabditis elegans Long protein 1...    30   0.91 
U23514-10|AAK95879.1|  301|Caenorhabditis elegans Long protein 1...    30   0.91 
U23514-9|AAC46538.1|  312|Caenorhabditis elegans Long protein 1,...    30   0.91 
Z81497-1|CAB04077.1| 1081|Caenorhabditis elegans Hypothetical pr...    28   2.8  
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ...    28   2.8  
U39648-9|AAM15605.1|  186|Caenorhabditis elegans Hypothetical pr...    28   3.7  
AF039719-12|AAB96758.1|  293|Caenorhabditis elegans Hypothetical...    28   3.7  
Z49132-7|CAA88986.1|  403|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z99288-10|CAB16552.2|  338|Caenorhabditis elegans Hypothetical p...    27   6.4  
Z82267-3|CAB05191.1|  186|Caenorhabditis elegans Hypothetical pr...    27   6.4  
Z81483-7|CAB03964.2|  338|Caenorhabditis elegans Hypothetical pr...    27   6.4  
Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U46671-5|AAA85750.2|  147|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>AL110485-23|CAB60377.3|  770|Caenorhabditis elegans Hypothetical
           protein Y46G5A.29 protein.
          Length = 770

 Score = 32.3 bits (70), Expect = 0.17
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 27  NCQLNAPQCYGQYLYWKRKSQAQCPWLRNLTNQMKLG-AATAGLAYDNVNGHG 182
           NC+      YG    WKR  + QC  +RN T+   L  AA+ G+     NG G
Sbjct: 514 NCERPCQDIYGSCRVWKR--EGQCQEMRNATDFFDLNCAASCGVCVKVDNGTG 564


>U23514-11|AAM48531.1|  287|Caenorhabditis elegans Long protein 1,
           isoform c protein.
          Length = 287

 Score = 29.9 bits (64), Expect = 0.91
 Identities = 15/55 (27%), Positives = 19/55 (34%)
 Frame = +3

Query: 21  CTNCQLNAPQCYGQYLYWKRKSQAQCPWLRNLTNQMKLGAATAGLAYDNVNGHGA 185
           C+NC  NAP CY    Y  +  +A      + T        T     D     GA
Sbjct: 215 CSNCPANAPACYQGLCYMPKNYEAPTTTTESTTTSTTTEEPTTTCEPDEPEAEGA 269


>U23514-10|AAK95879.1|  301|Caenorhabditis elegans Long protein 1,
           isoform b protein.
          Length = 301

 Score = 29.9 bits (64), Expect = 0.91
 Identities = 15/55 (27%), Positives = 19/55 (34%)
 Frame = +3

Query: 21  CTNCQLNAPQCYGQYLYWKRKSQAQCPWLRNLTNQMKLGAATAGLAYDNVNGHGA 185
           C+NC  NAP CY    Y  +  +A      + T        T     D     GA
Sbjct: 229 CSNCPANAPACYQGLCYMPKNYEAPTTTTESTTTSTTTEEPTTTCEPDEPEAEGA 283


>U23514-9|AAC46538.1|  312|Caenorhabditis elegans Long protein 1,
           isoform a protein.
          Length = 312

 Score = 29.9 bits (64), Expect = 0.91
 Identities = 15/55 (27%), Positives = 19/55 (34%)
 Frame = +3

Query: 21  CTNCQLNAPQCYGQYLYWKRKSQAQCPWLRNLTNQMKLGAATAGLAYDNVNGHGA 185
           C+NC  NAP CY    Y  +  +A      + T        T     D     GA
Sbjct: 240 CSNCPANAPACYQGLCYMPKNYEAPTTTTESTTTSTTTEEPTTTCEPDEPEAEGA 294


>Z81497-1|CAB04077.1| 1081|Caenorhabditis elegans Hypothetical
           protein F10C2.4 protein.
          Length = 1081

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
 Frame = +3

Query: 105 LRNLTNQMKLGAATAGLAYD-NVNGHGATLTKTHIPGFGDKMTAAGKVNLFHNDNHDFSA 281
           L+N  N M  G    G  Y+ N+N     L KT+I G G     AGK  +  N       
Sbjct: 195 LKNGVNLMGKGPVNVGNLYESNINVIVMFLAKTNIVGCGWIEIPAGKCRILSNSEKSSRC 254

Query: 282 KAFATKNLPNI 314
           +   T  + N+
Sbjct: 255 QIEVTVPVKNL 265


>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
            potassium channelsprotein 2 protein.
          Length = 1564

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 36   LNAPQCYGQYLYWKRKSQAQCPWLRNLTNQMKLGAATAGLA 158
            LN  Q   +Y    ++++A+  W+R + N  +L AAT+ LA
Sbjct: 1516 LNREQVLSEYAESTKRTRAKKSWIRVVKNVARLRAATSILA 1556


>U39648-9|AAM15605.1|  186|Caenorhabditis elegans Hypothetical
           protein T13C5.6 protein.
          Length = 186

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 36  LNAPQCYGQYLYWKRKSQAQCPWLRNLTNQMK-LGAATAGL 155
           +NA + Y ++LY + K Q  C W+  L +       AT GL
Sbjct: 9   INADETYSKWLYDENKYQTACTWIEWLIHGFPWFVVATLGL 49


>AF039719-12|AAB96758.1|  293|Caenorhabditis elegans Hypothetical
           protein K04F10.7 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +2

Query: 275 QCQSIRH*KPAKYSSSSELQHCRCRSGLHVQGQDWC 382
           QCQ  +    AKY      Q+C+  +  H Q   WC
Sbjct: 25  QCQKCQK-NEAKYGKPGTCQYCKLNAAFHDQKCVWC 59


>Z49132-7|CAA88986.1|  403|Caenorhabditis elegans Hypothetical
           protein ZK666.7 protein.
          Length = 403

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 114 LTNQMKLGAATAGLAY--DNVNGHGATLTKTHIPGF 215
           L  +MK+  A A +AY  DNVNG    L++   PG+
Sbjct: 180 LATRMKVDVAIATVAYGQDNVNGFLRQLSQIATPGY 215


>Z99288-10|CAB16552.2|  338|Caenorhabditis elegans Hypothetical
           protein ZK262.11 protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 334 LKFGT*GIFGRFLVANALALK-SWLSLWKRFTLP 236
           L+F T GI G F     +  K SW+ LWK+F  P
Sbjct: 108 LQFVTLGITGIFENRFRIICKFSWVPLWKKFITP 141


>Z82267-3|CAB05191.1|  186|Caenorhabditis elegans Hypothetical
           protein F38C2.5 protein.
          Length = 186

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 306 PNIPQVPNFNTVGAGVDYMFKDKIGASATAAHTD 407
           P +PQ  ++    +G+   F D  GASA+++ TD
Sbjct: 151 PLMPQFSSWFAPSSGLSREFLDNFGASASSSSTD 184


>Z81483-7|CAB03964.2|  338|Caenorhabditis elegans Hypothetical
           protein C43D7.6 protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 334 LKFGT*GIFGRFLVANALALK-SWLSLWKRFTLP 236
           L+F T GI G F     +  K SW+ LWK+F  P
Sbjct: 108 LQFVTLGITGIFENRFRIICKFSWVPLWKKFITP 141


>Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical
           protein C05C10.2b protein.
          Length = 1553

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
 Frame = +3

Query: 246 NLFHNDNHDFSAKAFATKN-----LPNIPQVPN 329
           N  H+D  DF+A ++  KN     LP +P++PN
Sbjct: 530 NCRHSDAIDFAAMSYIWKNIRQQHLPKLPKLPN 562


>Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical
           protein C05C10.2a protein.
          Length = 1551

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
 Frame = +3

Query: 246 NLFHNDNHDFSAKAFATKN-----LPNIPQVPN 329
           N  H+D  DF+A ++  KN     LP +P++PN
Sbjct: 530 NCRHSDAIDFAAMSYIWKNIRQQHLPKLPKLPN 562


>U46671-5|AAA85750.2|  147|Caenorhabditis elegans Hypothetical
           protein C14E2.5 protein.
          Length = 147

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 18/75 (24%), Positives = 29/75 (38%)
 Frame = +3

Query: 192 TKTHIPGFGDKMTAAGKVNLFHNDNHDFSAKAFATKNLPNIPQVPNFNTVGAGVDYMFKD 371
           T   IP F   + A  K  LF  +N D   +   +    N   + NF +  +   Y  +D
Sbjct: 10  TAMEIPTFARALNAEPKSQLFLKENQDSQPRLLVSTAEKNGSVISNFKS--SWNHYYIED 67

Query: 372 KIGASATAAHTDVFN 416
              +    + T VF+
Sbjct: 68  NSSSDENISQTTVFD 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,345,809
Number of Sequences: 27780
Number of extensions: 240673
Number of successful extensions: 543
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)