Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_J16
         (453 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.1  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   4.7  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    21   4.7  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    21   4.7  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    21   4.7  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    21   4.7  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    21   4.7  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    21   4.7  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   4.7  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    21   4.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   4.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   4.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   4.7  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.3  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 263 QPRFQCQSIRH*KPAKYSSSSELQHCR 343
           QP F+C+  +     +Y S+  L H R
Sbjct: 418 QPAFRCKPSQRFASGRYYSAYSLHHVR 444


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 362 HVVHSGTDSVEVRNLRNIWQVFSGE 288
           H  H     V+V NLR   +V +GE
Sbjct: 39  HCSHCDRQFVQVANLRRHLRVHTGE 63


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 255 HNDNHDFSAKAFATKNLPNIPQVP 326
           +N+N++ + K     N+ NI Q+P
Sbjct: 97  YNNNYNTNYKKLQYYNIINIEQIP 120


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 255 HNDNHDFSAKAFATKNLPNIPQVP 326
           +N+N++ + K     N+ NI Q+P
Sbjct: 97  YNNNYNTNYKKLQYYNIINIEQIP 120


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 255 HNDNHDFSAKAFATKNLPNIPQVP 326
           +N+N++ + K     N+ NI Q+P
Sbjct: 97  YNNNYNTNYKKLQYYNIINIEQIP 120


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 255 HNDNHDFSAKAFATKNLPNIPQVP 326
           +N+N++ + K     N+ NI Q+P
Sbjct: 97  YNNNYNTNYKKLQYYNIINIEQIP 120


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 255 HNDNHDFSAKAFATKNLPNIPQVP 326
           +N+N++ + K     N+ NI Q+P
Sbjct: 97  YNNNYNTNYKKLQYYNIINIEQIP 120


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 255 HNDNHDFSAKAFATKNLPNIPQVP 326
           +N+N++ + K     N+ NI Q+P
Sbjct: 97  YNNNYNTNYKKLQYYNIINIEQIP 120


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 255 HNDNHDFSAKAFATKNLPNIPQVP 326
           +N+N++ + K     N+ NI Q+P
Sbjct: 101 YNNNYNTNYKKLQYYNIINIEQIP 124


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 255 HNDNHDFSAKAFATKNLPNIPQVP 326
           +N+N++ + K     N+ NI Q+P
Sbjct: 97  YNNNYNTNYKKLQYYNIINIEQIP 120


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +1

Query: 283  KHSPLKTCQIFLKFRTSTLSVPEWTTCSRTRLVHLRPPLTPMSLIVMTTLW 435
            K +P+  CQ       + +++      S + LV  RPP  P  +I   T++
Sbjct: 1167 KSAPIH-CQTEQDAPEAPIAIKALVMSSESILVSWRPPSQPNGVITQYTVY 1216


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/45 (22%), Positives = 18/45 (40%)
 Frame = +3

Query: 246 NLFHNDNHDFSAKAFATKNLPNIPQVPNFNTVGAGVDYMFKDKIG 380
           +L  N+N DF      +   P++   P  ++   G      D +G
Sbjct: 349 HLISNENRDFQTTPTVSVEQPHLFLYPEVSSTYTGFGIQSTDFVG 393


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 46  LSAMVSTYTGNENHRLSALGS 108
           ++A++  +  +EN R S LGS
Sbjct: 362 MNAVIRNFNESENRRNSCLGS 382


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = -3

Query: 313 IFGRFLVANALALKSWLSLW 254
           +F  +L +  + + SW+S W
Sbjct: 245 VFQTYLPSILIVMLSWVSFW 264


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 11/40 (27%), Positives = 16/40 (40%)
 Frame = +1

Query: 292  PLKTCQIFLKFRTSTLSVPEWTTCSRTRLVHLRPPLTPMS 411
            PL++ +I        ++ P W      RLV L     P S
Sbjct: 888  PLRSLEILRLSGNRLVTFPVWQVTLNARLVELSLGSNPWS 927


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 199 VFVRVAPCPFTLS*ANPA 146
           +FV V PCP+     N A
Sbjct: 228 IFVPVKPCPWICELTNDA 245



 Score = 20.6 bits (41), Expect = 8.3
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +3

Query: 96  CPWLRNLTN 122
           CPW+  LTN
Sbjct: 235 CPWICELTN 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,575
Number of Sequences: 438
Number of extensions: 2773
Number of successful extensions: 19
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)