Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_J12
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.02 |pmt1||DNA methyltransferase homolog|Schizosaccharom...   114   8e-27
SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit L15|...    26   3.7  
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    25   4.9  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   6.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   8.6  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    25   8.6  

>SPBC19C2.02 |pmt1||DNA methyltransferase
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 330

 Score =  114 bits (274), Expect = 8e-27
 Identities = 62/158 (39%), Positives = 89/158 (56%), Gaps = 1/158 (0%)
 Frame = +2

Query: 23  RILELYSGIGGMICAWKESGLQGDVVAAVDINTVANFVYLHNFPKTKLINRNIQSLTPQE 202
           R+LELYSGIGGM  A   + +  D+V A+DIN  AN +Y  N  K    + +I +LT ++
Sbjct: 8   RVLELYSGIGGMHYALNLANIPADIVCAIDINPQANEIYNLNHGKLAK-HMDISTLTAKD 66

Query: 203 IKKLRVNTILMSPPCQPFTRNGKYLDENDPRTNSFLYLIGIMDQLNEV-EYILMENVKGF 379
                     MSP CQPFTR G   D  DPR+ +FL ++ ++  +N + EYIL+ENV+GF
Sbjct: 67  FDAFDCKLWTMSPSCQPFTRIGNRKDILDPRSQAFLNILNVLPHVNNLPEYILIENVQGF 126

Query: 380 EHSTVRNIFIDQLIQCDFTYQEFLLCPTSVGVPNSKAK 493
           E S         L  C +   E +L P    +PNS+++
Sbjct: 127 EESKAAEECRKVLRNCGYNLIEGILSPNQFNIPNSRSR 164


>SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 129 LATVFISTAATTSPCKPDSFHAQIMPPIPLYSSNI 25
           + TV+ S  A  +   P SF     PP+P+   +I
Sbjct: 149 ITTVYFSPLALRAHLHPSSFRTPPRPPLPVSKKDI 183


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 372 LTFSINMYSTSFSWSMIPIKYKNELVLGSFSSRY 271
           L F+ ++ S S + + I   Y   L + SFSSRY
Sbjct: 8   LLFAYSLLSFSLTAATIDETYDESLFIKSFSSRY 41


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 80  GLQGDVVAAVDINTVANFVYLHN--FPKTKLINRNIQSLTPQEIKKLRVNTILMSP 241
           GLQG++ AA D+N   +F  + N    +  +IN N +   P+ +  L    I   P
Sbjct: 423 GLQGELFAAFDLNR-HDFAAMWNQMLIQDDMINANTKKFDPRHLYGLTNQDIFRWP 477


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = -2

Query: 126  ATVFISTAATTSPCKPDSFHAQIMPPIPLYS 34
            +T+ +  +  T+P  P +   Q++PP P+++
Sbjct: 1424 STMPLKASQPTNPGAPSNHAPQVVPPAPMHA 1454


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 338 NEVEYILMENVKGFEHSTVRNIFIDQLIQCDFTYQEFLLC 457
           +E+E ++M  +  F     R +F+  L  C+ T+Q  L C
Sbjct: 162 DEMECLIM-GLNYFVSCIPREVFVLDLDTCELTFQNHLNC 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,169,730
Number of Sequences: 5004
Number of extensions: 44858
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)