Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_J12
         (508 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0681 - 24242485-24242560,24242721-24242785,24242874-242430...   116   1e-26
10_01_0028 - 359988-359996,360228-360332,360415-360536,360676-36...    31   0.53 
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662...    31   0.53 
05_01_0251 + 1901709-1901864,1901968-1901999,1902534-1902664,190...    28   3.7  
07_03_0064 + 12995669-12995904,12996299-12996533,12998223-129983...    28   5.0  

>01_05_0681 -
           24242485-24242560,24242721-24242785,24242874-24243029,
           24243073-24243121,24243291-24243366,24243456-24243666,
           24244038-24244160,24244245-24244363,24244439-24244532,
           24245123-24245233,24245336-24245392
          Length = 378

 Score =  116 bits (278), Expect = 1e-26
 Identities = 63/158 (39%), Positives = 90/158 (56%), Gaps = 1/158 (0%)
 Frame = +2

Query: 23  RILELYSGIGGMICAWKESGLQGDVVAAVDINTVANFVYLHNFPKTKLINRNIQSLTPQE 202
           ++LE YSGIGGM  +   SG + +VV A DIN VAN VY  NF   +    NIQ+LT  +
Sbjct: 8   KVLEFYSGIGGMRYSLAASGARAEVVEAFDINDVANDVYELNFGH-RPYQGNIQTLTASD 66

Query: 203 IKKLRVNTILMSPPCQPFTRNGKYLDENDPRTNSFLYLIGIMDQL-NEVEYILMENVKGF 379
           + K +    L+SPPCQP+TR G      D R  SF+ ++ +M  +    + + +ENV GF
Sbjct: 67  LDKYKAQAWLLSPPCQPYTRQGLQKHSADARAFSFIKILNLMKNMCFPPQMLFVENVVGF 126

Query: 380 EHSTVRNIFIDQLIQCDFTYQEFLLCPTSVGVPNSKAK 493
           E S   +  I+ L   +F  QEF+L P   G+P S+ +
Sbjct: 127 EVSDTHDQLIEVLSDLNFNTQEFILSPLQFGIPYSRPR 164


>10_01_0028 -
           359988-359996,360228-360332,360415-360536,360676-360763,
           360988-361056,361132-361461,361544-361610,361695-361753,
           361838-362056,362224-362289,362370-362500,362683-362782,
           362864-363001,363111-363218,363627-363723,363806-364257
          Length = 719

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
 Frame = +2

Query: 26  ILELYSGIGGM---ICAWKE-SGLQGDVVAAVDINTVANFVYLHNFPKTKLIN 172
           +L+LYSG GGM   +C     +GL  +   AVD N+ A     +N P+T++ N
Sbjct: 315 LLDLYSGCGGMSTGLCLGAALAGLNLETRWAVDFNSFACESLKYNHPRTEVRN 367


>03_02_0234 +
           6625417-6626184,6626314-6626339,6626435-6626531,
           6627009-6627116,6627194-6627328,6627429-6627528,
           6627763-6627974,6628060-6628125,6628231-6628464,
           6628583-6628641,6628716-6628782,6628863-6629192,
           6629267-6629335,6629417-6629503,6629605-6629692,
           6630057-6630178,6630251-6630355,6630442-6630485,
           6630558-6630627,6630711-6630814,6630980-6631189,
           6632935-6633018,6633291-6634003,6634115-6634649,
           6634703-6634789,6634826-6634970,6635049-6635125,
           6635215-6635359,6635462-6635626,6635725-6635958
          Length = 1761

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = +2

Query: 26  ILELYSGIGGM---IC-AWKESGLQGDVVAAVDINTVANFVYLHNFPKTKLINRNIQ 184
           +L+LYSG G M   +C  +  SG+  +   AVDIN  A     HN P +++ N   +
Sbjct: 455 LLDLYSGCGAMSTGLCLGFAFSGINLETRWAVDINKYACACLKHNHPYSQVRNEKTE 511



 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +2

Query: 218 VNTILMSPPCQPFTRNGKYLDENDP-RTNSFLYLIGIMDQLNEV--EYILMENV 370
           V+ I   PPCQ  +   ++   NDP        L+  MD +  +  +Y+LMENV
Sbjct: 627 VDVICGGPPCQGISGFNRFRKHNDPLEDEKNKQLVVFMDIVKYLRPKYVLMENV 680


>05_01_0251 + 1901709-1901864,1901968-1901999,1902534-1902664,
            1902740-1902821,1902928-1903054,1903369-1903686,
            1903785-1903846,1903988-1904074,1904139-1904195,
            1906113-1906197,1906916-1907185,1908158-1908254,
            1908390-1908436,1908826-1908939,1909024-1909117,
            1909360-1909457,1910356-1910455,1911445-1911521,
            1911824-1913122
          Length = 1110

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 23   RILELYSGIGGMICAWKESGLQGDVVAAVD 112
            R+L +YSGIGG   A    G+    V +VD
Sbjct: 973  RVLSIYSGIGGAAIALHRLGIPLQCVVSVD 1002


>07_03_0064 +
           12995669-12995904,12996299-12996533,12998223-12998384,
           12999446-12999566,13000095-13001608
          Length = 755

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +3

Query: 225 PYLCLHRVNHLHGTENTSTKTTLEPIHSYI*SESWTN*MRL 347
           PYL L++   L  + +TS+K++L P+   +   SW N +R+
Sbjct: 105 PYLPLYKELTLFTSTHTSSKSSLIPLKFSLVVSSWWNRIRI 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,875,761
Number of Sequences: 37544
Number of extensions: 241856
Number of successful extensions: 497
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)