Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_J11
(635 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce... 29 0.74
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 26 4.0
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 26 4.0
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch... 26 5.2
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 26 5.2
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 5.2
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 25 9.1
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 25 9.1
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 25 9.1
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 25 9.1
>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 28.7 bits (61), Expect = 0.74
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 525 FYFNMKKPAAEAHRIILDTIKTAISDRTCREWFQRSKSGDIGVEN 391
FY M++ A A R I KTA+ D+ E+ Q G EN
Sbjct: 106 FYLLMRRFCAAAFRDIQTRSKTALLDKVVAEYNQMWMDGPFNTEN 150
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 26.2 bits (55), Expect = 4.0
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Frame = -3
Query: 165 MERQTRKGFPHR-IVTGDKKW-----VHYNNPKRRKSWGLPGHTATSTPRPNI 25
M QTR+G P+ + D+++ V+ ++PK + W P T P P++
Sbjct: 1 MAYQTREGLPNGWVAQWDERYKCYFYVNESDPKAKPQWECPVRGLTIPPPPSV 53
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 174 QQSNAARHLLVSTRGVPNILLTKSFSTVS 260
Q SN H L+S + N+L T FST+S
Sbjct: 810 QDSNRYLHPLLSVMDLINLLYTDIFSTIS 838
>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 25.8 bits (54), Expect = 5.2
Identities = 8/16 (50%), Positives = 14/16 (87%)
Frame = +1
Query: 211 LVGYLISFLLNHSQLF 258
++GYL+SF+L H+Q +
Sbjct: 222 VIGYLLSFILKHAQKY 237
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 25.8 bits (54), Expect = 5.2
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -2
Query: 154 NAKGISPSYSYWGQKMGTLQ*SQAQKIMGIARS--YC-YVNTS 35
+AKG P Y YW K L+ + K +G + S YC Y N +
Sbjct: 173 SAKGQCPKYLYWNNKSYLLKKKRFLKEVGNSPSAVYCRYYNAN 215
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 5.2
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = +1
Query: 355 IFNDFFPSTTMSVFD-----TNITTLRTLEPFTTRSVTNS 459
I N P T+ SV + T+ TTL T P T+ SV NS
Sbjct: 3185 IVNSSTPITSSSVLNSSTPITSSTTLNTSTPITSSSVLNS 3224
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 25.0 bits (52), Expect = 9.1
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +2
Query: 545 LREFGLNSDIFHKTIIVMPTQKLYH 619
+R++ D+FHK I++P + +H
Sbjct: 430 VRKWTQKVDLFHKKYIIVPINETFH 454
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 25.0 bits (52), Expect = 9.1
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = -2
Query: 325 LVSNSRKIIRTIGYQSASQNACETVENDLVRRILGTPRVETK 200
L+SN+ + I YQS S E DL RI TP E K
Sbjct: 35 LISNASDALDKIRYQSLSDPHALDAEKDLFIRI--TPDKENK 74
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +2
Query: 326 SSLRITSNAVSSTTFSRPPLCRFSTPIS 409
S +RI + F+R P+CR + P++
Sbjct: 493 SEIRIAAARTCCQVFARDPICRKTNPLA 520
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = -3
Query: 480 ILDTIKTAISDRTCREWFQRSKSGDIGVENRHSGGREKVVEDTALEVILSED 325
+L+ +TA+ R R W + +E RH V + A +++L +D
Sbjct: 343 LLNHCRTAMGARNLRRWIVQPLLDAKSIERRHDLVSALVEDAEARQLLLDDD 394
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,793,932
Number of Sequences: 5004
Number of extensions: 60180
Number of successful extensions: 200
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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