Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_J11
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0179 + 7500647-7500779,7503021-7503222,7503356-7503427,750...    32   0.44 
08_01_0271 - 2189482-2190567                                           31   1.0  
04_01_0554 - 7139623-7140390                                           28   7.1  
08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767           27   9.4  
01_04_0101 + 16023442-16023516,16023534-16023647,16024044-16024208     27   9.4  

>02_02_0179 +
           7500647-7500779,7503021-7503222,7503356-7503427,
           7503655-7503726,7504212-7504283,7504711-7504782,
           7505045-7505116,7505209-7505280,7505688-7505759,
           7506215-7506292,7506670-7506729,7506810-7506848,
           7506949-7506998,7507110-7507480,7508467-7508662,
           7508856-7508936,7509694-7509848,7510302-7510512,
           7510648-7510882,7510995-7511145,7511813-7512181
          Length = 944

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 519 FNMKKPAAEAHRIILDTIKTAISDRTCREWFQRSKSGDIGVENR 388
           FN++  A   HR+I  T  T I+D T    F  +  G  GV +R
Sbjct: 487 FNIQDEAGGVHRVITKTFTTNITDNTLEIHFYWAGKGTTGVPDR 530


>08_01_0271 - 2189482-2190567
          Length = 361

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/65 (30%), Positives = 32/65 (49%)
 Frame = -3

Query: 510 KKPAAEAHRIILDTIKTAISDRTCREWFQRSKSGDIGVENRHSGGREKVVEDTALEVILS 331
           ++PAA A   +   ++ A S    R   Q  +SGD+GV  RH+ G ++V     L + L 
Sbjct: 99  REPAAAAISSVYGLLRLARSGPEGRR--QVMESGDVGVLLRHAAGGDEVAARALLHLSLD 156

Query: 330 EDSCQ 316
            D  +
Sbjct: 157 GDDAR 161


>04_01_0554 - 7139623-7140390
          Length = 255

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +1

Query: 172 FSNQTPLDISWFQLVGYLISFLLNHSQLFHRRFDLLTDTQW 294
           F++ T   + W +   +  + LLNH   F  RF L   + W
Sbjct: 36  FTSSTTGSVRWDKFESFATNLLLNHDAPFLDRFRLRLPSSW 76


>08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767
          Length = 1041

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 222 VPHELKPRDVERRLIAEQLMERQTRKGFPHRIVTGDKKWVH 100
           VP ELK  +VE  L  E+ M   T   +   +  GDK+  H
Sbjct: 810 VPEELKGSNVETLLRGEERMLESTSSSWQLELSIGDKQVKH 850


>01_04_0101 + 16023442-16023516,16023534-16023647,16024044-16024208
          Length = 117

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -3

Query: 222 VPHELKPRDVERRLIAEQLMERQTRKGFPHRIVTGD 115
           VP +++  D+ER    EQL  R  R G  HRI+  D
Sbjct: 48  VPKDVRSHDIERVRSKEQLSTRVGR-GQVHRIIEND 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,221,920
Number of Sequences: 37544
Number of extensions: 357917
Number of successful extensions: 819
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)