Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_J10
         (365 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0348 - 9233032-9233154,9233233-9233311,9233387-9233511,923...    28   2.6  
07_03_1502 + 27010328-27010509,27010715-27010973,27011989-270129...    27   6.0  
01_04_0136 + 16506747-16506982,16507128-16507728,16510443-165108...    27   6.0  

>02_02_0348 -
           9233032-9233154,9233233-9233311,9233387-9233511,
           9233597-9233734,9233802-9233993,9235269-9237209
          Length = 865

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 71  VFL-LNKNSEYVFIYLSNEGLRKLSVLKPIKCSRLQYQKRNS*NTQFRRLKK 223
           +FL LN+NS + ++ + N    K+ +L  ++  +  Y K    N   + ++K
Sbjct: 712 IFLPLNRNSTHWYVAVLNGAKEKIQILDSMRMDKSYYDKDKDLNNTIKGIEK 763


>07_03_1502 +
           27010328-27010509,27010715-27010973,27011989-27012975,
           27013388-27013822
          Length = 620

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 18/53 (33%), Positives = 30/53 (56%)
 Frame = +2

Query: 29  GITGVSLCYVIKINVFLLNKNSEYVFIYLSNEGLRKLSVLKPIKCSRLQYQKR 187
           G TG++L + I  + FLL   +E +    S++ LRKL++   IK +  +  KR
Sbjct: 316 GETGITLRHKISEDPFLLGNLAEILEDSKSSQELRKLTIDILIKLAMDETTKR 368


>01_04_0136 +
           16506747-16506982,16507128-16507728,16510443-16510842,
           16513595-16513709,16513776-16514352
          Length = 642

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 2   AISPLPNP*GITGVSLCYVIKINVFLLNKNSEYVFIYLSNE 124
           ++  L N   I+ VSLC   K  V + N   EYV ++ +N+
Sbjct: 381 SLPQLVNEHAISSVSLCADFKHVVHIANDVEEYVLVHHNNK 421


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,817,350
Number of Sequences: 37544
Number of extensions: 129507
Number of successful extensions: 163
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)