Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_J09
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos...    29   0.59 
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    26   3.1  
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   7.2  
SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr 1|||...    25   7.2  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   7.2  

>SPCC1235.12c |mug146||meiotically upregulated gene
           Mug46|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +3

Query: 183 SVGS*AFCRKHVS*LAYNEPQFSFKENFHTHQPQYDDNTLSSTYQVNNLS 332
           ++GS +FC KH   + Y+E   + + NF +H    DD T S  +  N  S
Sbjct: 99  TLGSVSFCEKHAIDINYSE-NVNKQLNFESH---LDDQTCSKRFYFNEQS 144


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 8/19 (42%), Positives = 16/19 (84%)
 Frame = +1

Query: 400  IILQYLTIYYVISVAFYVI 456
            I+L+Y T+Y+ + +AF+V+
Sbjct: 1673 IVLRYATLYFSLFIAFFVL 1691


>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = -3

Query: 441 HRNYIIYSQILQDNE--LKIRMTT*QTKIALTK 349
           HR+ I+Y++ L+ NE  LK+       K+A+TK
Sbjct: 272 HRDRILYAKFLELNESLLKVASFQQMNKLAVTK 304


>SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 155 IVFVMFHLIKRWL 193
           +VFV+F+LI RWL
Sbjct: 222 LVFVLFYLIYRWL 234


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 38  QSQTGYRQGTVKIYIKFESTNNHHNT 115
           +S   +R G  KI+I+ ES +N +NT
Sbjct: 776 ESVKKHRDGLSKIFIRPESADNSNNT 801


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,059,369
Number of Sequences: 5004
Number of extensions: 36693
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)