Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_J09
         (542 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0272 + 19053455-19053587,19054665-19056627,19056827-190568...    30   1.4  
01_05_0600 + 23566223-23566355,23567752-23567855,23567958-235680...    29   1.8  
06_03_1290 - 29023265-29023469,29023762-29023983,29024097-29025262     28   5.5  
06_03_0482 + 21307314-21307458,21308747-21308850,21308924-213090...    27   9.7  
03_05_0968 + 29277122-29277445,29278389-29278505,29278957-292791...    27   9.7  

>06_03_0272 +
           19053455-19053587,19054665-19056627,19056827-19056887,
           19056975-19057198,19057573-19057642,19058453-19058515
          Length = 837

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 22  TPSGRTIPNRLSTRHSKDLY 81
           T  GR+IPNR+S  HS+ +Y
Sbjct: 82  TADGRSIPNRISALHSRSVY 101


>01_05_0600 +
           23566223-23566355,23567752-23567855,23567958-23568053,
           23568134-23568253,23568543-23568710,23568921-23569012,
           23569739-23569857,23570547-23570670,23570801-23570924,
           23571291-23571359,23571470-23571561,23571645-23571722,
           23571927-23571994,23572073-23572209
          Length = 507

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +3

Query: 204 CRKHVS*LAYN---EPQFSFKENFHTHQPQYD 290
           CRK    + Y+    P+F +K  F +H+P++D
Sbjct: 82  CRKEAEKVDYSVSRHPEFRYKTEFQSHEPEFD 113


>06_03_1290 - 29023265-29023469,29023762-29023983,29024097-29025262
          Length = 530

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 131 FNVFSYYLIVFVMFHLIKRWLVSFLSKAR 217
           F VFSY++++ V   L+  W +S +S A+
Sbjct: 190 FVVFSYFVVIHVAGFLLVLWYISRVSSAK 218


>06_03_0482 +
           21307314-21307458,21308747-21308850,21308924-21309019,
           21309264-21309383,21310049-21310246,21310392-21310483,
           21310848-21310966,21311722-21311845,21312016-21312139,
           21312998-21313066,21313146-21313237,21313330-21313407,
           21313677-21313744,21313842-21313978
          Length = 521

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 240 PQFSFKENFHTHQPQYD 290
           P+F +K  F +H+P++D
Sbjct: 101 PEFRYKSEFQSHEPEFD 117


>03_05_0968 +
           29277122-29277445,29278389-29278505,29278957-29279114,
           29279678-29279727,29279968-29280161,29280867-29281049,
           29281152-29281270,29281383-29281522,29281857-29281937,
           29282286-29282389
          Length = 489

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 267 HTHQPQYDDNTLSSTYQVNNLSIL 338
           H  +P Y++NT+ S Y V +  +L
Sbjct: 218 HYERPPYNENTIRSVYHVRHYDVL 241


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,154,429
Number of Sequences: 37544
Number of extensions: 196715
Number of successful extensions: 481
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)