Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_J07
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    28   0.83 
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    27   1.4  
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    27   1.9  
SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   2.5  
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    26   3.3  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    25   5.8  
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   7.7  

>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 81  VVYMIYHGFGDSKTVVRDLILYSVLT 4
           ++  + HGF DSK     LIL SVLT
Sbjct: 297 ILSSLAHGFADSKVDASSLILSSVLT 322


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1564

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 336  FSGESVENEVPSYDFPFVSRSQWSARQPN 422
            FS   + ++VP ++F F+SR+ W+A   N
Sbjct: 1006 FSINDILSQVPVFEFIFLSRNFWTASLGN 1034


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 318 KAYPSIFSGESVENEVPSYDFP-FVSRSQWSARQPNQTL 431
           + Y    SG+SVE E P   FP   +R+ W   + +Q+L
Sbjct: 38  QVYRCPISGKSVEYECPESGFPTHCNRTHWEQDKIHQSL 76


>SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 280 NILNIITFNTIHKTRLLQYFLN 215
           N+L++ TFN + K RL QY L+
Sbjct: 102 NVLSLNTFNILGKKRLSQYTLD 123


>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 8/43 (18%), Positives = 22/43 (51%)
 Frame = -3

Query: 150 FLLDLYIRAHVFIRNKCSYQNHYVVYMIYHGFGDSKTVVRDLI 22
           ++ D +   H ++ ++  Y +     ++YH + +   V+ DL+
Sbjct: 293 WMADYHHPTHNYLMDRSRYPDFNARKLVYHAYVEQSAVINDLL 335


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -2

Query: 418 GCLALHCERLTKGKSYDGTSFSTDSPEKIDGYAFTFIIIVTNNPIDNI-LNIITFNT 251
           G   LH +RLT    ++  +  ++SP  +     TF  +    P++++   I T NT
Sbjct: 743 GSQGLHYKRLTTDMIHNLFNVPSNSPVNMQAIYNTFSKMAVGEPMESLGTQIATLNT 799


>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = +3

Query: 63  DKSYKQRSDFDKSIYYV*IHVLGYINLIKTIFVSSVVDVKSVIESAAALLLFKKYCNNRV 242
           D +Y++ SD    ++     +L Y+ L   IF + VVDVK   E  +  LLF  +    +
Sbjct: 13  DFTYRECSDVANDVFKKTQWLL-YVFLF-IIFANCVVDVKYYFEGFSHSLLFVYFFLTLI 70

Query: 243 LCIV 254
           + +V
Sbjct: 71  ILLV 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,013,542
Number of Sequences: 5004
Number of extensions: 39837
Number of successful extensions: 121
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)