Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_J07
         (470 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0921 + 7104923-7105396,7106624-7106768,7107078-7107121           29   2.5  
09_06_0081 + 20745627-20748144,20748211-20748308                       28   3.3  
02_05_0848 + 32195610-32195625,32196078-32197585                       28   3.3  
01_06_0300 + 28312590-28313939                                         28   4.4  
04_01_0476 + 6215401-6217445,6217538-6217630,6218031-6218133,621...    27   5.8  
11_01_0332 + 2483743-2484131,2486062-2486182,2486307-2486426,248...    27   7.6  

>06_01_0921 + 7104923-7105396,7106624-7106768,7107078-7107121
          Length = 220

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -3

Query: 165 SKRILFLLDLYIRAHVFIRNKCSYQNHYVVYMIYHGFGD---SKTVVRDL 25
           S+ I+F + +  R  V +RN  SY  H+    I  G G+   SKT  RDL
Sbjct: 170 SECIIFRVSVS-RYQVTVRNHQSYSGHFTEVKIVSGLGNAVGSKTSARDL 218


>09_06_0081 + 20745627-20748144,20748211-20748308
          Length = 871

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 369 SYDFPFVSRSQWSARQPNQTLPLKTPVPYVVIHH 470
           S+D+  VS S  +   P  +L L++P P++ + H
Sbjct: 472 SFDYDGVSSSSSTPHVPTTSLALRSPAPHLRVRH 505


>02_05_0848 + 32195610-32195625,32196078-32197585
          Length = 507

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 111 RNKCSYQNHYVVYMIYHGFGDSKTVVRDLILYSVLTD 1
           RN    +  YVV+  ++G G+    +    LY++LTD
Sbjct: 104 RNAARSECQYVVWTPFNGLGNRMLALASTFLYALLTD 140


>01_06_0300 + 28312590-28313939
          Length = 449

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -3

Query: 159 RILFLLDLYIRAHVFIRNKCSYQN-HYVVYMIYHGFGDSKTVVRDL 25
           R+ F+ +L+      +    S+ + H++ Y++Y G  +S T++  L
Sbjct: 109 RVTFVCELHAAEENLVVLSASFDHAHHIYYLVYDGIDESLTMIPSL 154


>04_01_0476 +
           6215401-6217445,6217538-6217630,6218031-6218133,
           6218237-6218254
          Length = 752

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 117 FIRNKCSYQNHYVVYMIYHGFGDS 46
           FIR   + ++HYVV+ + H F +S
Sbjct: 522 FIRKVANIEDHYVVHDLLHDFAES 545


>11_01_0332 +
           2483743-2484131,2486062-2486182,2486307-2486426,
           2486897-2487127,2487205-2487783
          Length = 479

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = -2

Query: 418 GCLALHCERLTKGKSYDGTSFSTDSPEKIDGYAFTFIIIVTNNPIDNI 275
           G  +L+  R  KGK   GTS +T S EK  G   T I+   N+ I+ I
Sbjct: 432 GSRSLNSRRTRKGKGQSGTS-ATSSAEKSKG---TSIVSRINSKIERI 475


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,966,757
Number of Sequences: 37544
Number of extensions: 217079
Number of successful extensions: 553
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)