Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_J05
(537 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo... 62 5e-11
SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces ... 33 0.020
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 28 0.77
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc... 27 1.8
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.3
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch... 26 3.1
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy... 26 3.1
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 26 4.1
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 25 5.4
SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy... 25 9.5
SPCC24B10.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 25 9.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 9.5
>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 62.1 bits (144), Expect = 5e-11
Identities = 42/172 (24%), Positives = 87/172 (50%), Gaps = 5/172 (2%)
Frame = +2
Query: 26 RAQEGSPQTVIGAVIGKQKGRNIEVMNSFELVFSVXXXXXXXXXXYYNLKE---EQFKQV 196
R+ +G+ + V+G ++G+ G + V NS+ + F +N E E FK++
Sbjct: 33 RSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASVWFLDHNFMESMNEMFKKI 92
Query: 197 FSEMDFLGWYTTGDTPTERDIAVHRQICDINDCPVMLMLNPAGRNGEQLPVVLYESVIDV 376
+ +GWY TG D+ ++ + PV+++++ ++ LP Y ++ ++
Sbjct: 93 NANEKLVGWYHTGPQLRPSDLEINNLLKKYIPNPVLVIIDVKPKS-VGLPTNAYFAIDEI 151
Query: 377 VN--GRATMLLAPLTYTLAAEEAERIGVDHVARVSSGEAALNSLVAEHLTAQ 526
+ +++ L ++ AEEAE IGV+H+ R + +A++ +L A +T Q
Sbjct: 152 EDDGSKSSRTFVHLPSSIEAEEAEEIGVEHLLR-DTRDASVGTL-ATRVTQQ 201
>SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 33.5 bits (73), Expect = 0.020
Identities = 23/75 (30%), Positives = 39/75 (52%)
Frame = +2
Query: 305 LMLNPAGRNGEQLPVVLYESVIDVVNGRATMLLAPLTYTLAAEEAERIGVDHVARVSSGE 484
L+L+PA RN LP++ +I ++ AT+LL L+ EE + + R +
Sbjct: 4 LLLDPALRNWVLLPIMFVMILIGILRHNATILLQSSPKKLSKEEIREQRL--LQRAYALR 61
Query: 485 AALNSLVAEHLTAQR 529
A NSL+ E + A++
Sbjct: 62 ACSNSLLPESIEARK 76
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 28.3 bits (60), Expect = 0.77
Identities = 21/67 (31%), Positives = 36/67 (53%)
Frame = -1
Query: 495 LRAASPDDTLATWSTPILSASSAAKVYVSGANSIVALPFTTSITDSYNTTGSCSPFLPAG 316
L ++SP +T S P +S++ ++ V S S+ + F+T + S NTT + LP+
Sbjct: 136 LTSSSPSAVSSTTSIPSISSTISSSVSTSSFTSLSSSGFST-VLSSTNTTSA----LPSS 190
Query: 315 FNINITG 295
N+TG
Sbjct: 191 -GWNVTG 196
>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 431
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 5 SEHWTRLRAQEGSPQTVIGAVIGKQKGRNIEVMNSFE 115
+EH ++ A G P T +GA++G Q MN+FE
Sbjct: 73 AEHIDKVVALYG-PATKVGAIVGGQTSCKAPEMNAFE 108
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 2.3
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Frame = -1
Query: 522 AVKCSATKLLRAASPDDTLATWSTP------ILSASSAAKVYVSGANSIVAL-PFTTSIT 364
A S+T L A S T + + P +L SS + +S ANS A +T +T
Sbjct: 497 ATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASSTPLT 556
Query: 363 DSYNTTGSCSPFLPAGFNINITGQS 289
+TT + + P G N IT +
Sbjct: 557 SVNSTTATSASSTPFG-NSTITSSA 580
Score = 26.2 bits (55), Expect = 3.1
Identities = 24/81 (29%), Positives = 35/81 (43%)
Frame = -1
Query: 489 AASPDDTLATWSTPILSASSAAKVYVSGANSIVALPFTTSITDSYNTTGSCSPFLPAGFN 310
+AS + ST SASS VS ANS A +++ S N+T + S +
Sbjct: 302 SASSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTS 361
Query: 309 INITGQSFISHICLWTAMSRS 247
+N T + S L + S S
Sbjct: 362 VNSTTATSASSTPLTSVNSTS 382
Score = 25.4 bits (53), Expect = 5.4
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Frame = -1
Query: 522 AVKCSATKLLRAASPDDTLATWSTP------ILSASSAAKVYVSGANSIVALPFTTSITD 361
A S+T L A S T + + P +L SS + +S ANS A +++
Sbjct: 383 ATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASSTPLS 442
Query: 360 SYNTTGSCS 334
S N+T + S
Sbjct: 443 SVNSTTATS 451
>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 370
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 380 SQHLLLIHTTQLAAVLHFFLQGLTLTSQG 294
SQHL I T+L+ L FF+QG+ G
Sbjct: 132 SQHLDAIFATRLSPWLLFFIQGVNEIEDG 160
>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 385
Score = 26.2 bits (55), Expect = 3.1
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Frame = -1
Query: 504 TKLLRAASPDDTLATWSTPILSASSAAKVYVSGANSIVALPFTTSITDSYN----TTGSC 337
T + +P + +T+ PI + +S+A SG SI + T+S S + T S
Sbjct: 45 TSTITPETPSSSSSTF-VPISTHTSSATNTTSGQLSISSSSSTSSEYSSSSIPITTVSSS 103
Query: 336 SPFLPAGFNINITGQSFISHICLWTAMSRSVGVSPV 229
F+P+ S ++ + +++S +V +PV
Sbjct: 104 DSFIPSSSQTISASSSTTDNVIVSSSISSTVSSTPV 139
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 417 YVSGANSIVALPFTTSITDSYNTTGSCSPFLPAGFNI 307
YV G+ S+ P TS+ +SY LP+GF++
Sbjct: 437 YVEGSGSMSTTPLATSVNNSYK--------LPSGFSV 465
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.4 bits (53), Expect = 5.4
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = -1
Query: 471 TLATWSTPILSASSAAKVYVSGANSIVA----LPFTTSITDSYNT 349
T+ T +T S S + SG+NSIV +P TTS+ Y T
Sbjct: 669 TVTTTTTVGYSGSVTTTLTGSGSNSIVTETVDVPTTTSVNYGYTT 713
>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 504 TKLLRAASPDDTLATWSTPILSASSAAKVY 415
T+LL P D++ TWS+P S + + +
Sbjct: 18 TELLGHVKPIDSVVTWSSPGSSRQAIGEAF 47
>SPCC24B10.16c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 110
Score = 24.6 bits (51), Expect = 9.5
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -1
Query: 504 TKLLRAASPDDTLATWSTPILSASSAAKVYVS 409
TKL A S DD L+T + ILS A+VY S
Sbjct: 46 TKLTGAGSIDD-LSTQMSRILSKKFQAQVYTS 76
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 24.6 bits (51), Expect = 9.5
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -1
Query: 477 DDTLATWST--PILSASSAAKVYVSGANSIVALPFTTSITDSYNTTGSCSPFLPA 319
+D A+ ST P+ S++ S + I+ +TS T S +TTGS S LP+
Sbjct: 58 EDLNASLSTGSPVEITSTSCTTDTSASTPIITE--STSSTSSASTTGSSSSPLPS 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,158,075
Number of Sequences: 5004
Number of extensions: 41618
Number of successful extensions: 120
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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