Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_J05
(537 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1145 - 24674319-24674403,24674691-24674746,24674885-246749... 106 1e-23
12_02_1159 + 26585042-26585441,26585520-26585608,26585670-265857... 52 4e-07
04_04_0270 - 24061852-24063264 31 0.44
01_06_0544 + 30118208-30118417,30118959-30119063,30119179-301192... 30 1.3
08_01_0486 + 4262065-4262346 29 2.3
12_02_0642 + 21454142-21454251,21454683-21454872,21454988-214550... 29 3.1
12_02_0639 + 21443480-21443589,21444022-21444211,21444327-214444... 29 3.1
12_02_0633 + 21402847-21402862,21403143-21404975,21405052-214051... 29 3.1
10_08_0848 + 21035446-21035461,21035742-21036233,21036400-210369... 29 3.1
05_03_0187 + 9413575-9414895,9415014-9415289,9415513-9415631,941... 29 3.1
05_03_0065 - 7953414-7953845,7953963-7954081,7954158-7955990,795... 29 3.1
01_04_0076 + 15780981-15780996,15781277-15783109,15783186-157833... 29 3.1
01_01_0247 + 2023019-2023802,2023894-2023997 28 4.1
08_02_1285 - 25881091-25881798 27 7.2
08_02_1280 + 25846557-25846871,25847278-25847349,25847441-258475... 27 7.2
02_05_0800 + 31822424-31822550,31823408-31823502,31823928-31824173 27 7.2
11_04_0349 + 16651344-16651868 27 9.5
07_01_1039 - 9037689-9038225,9038831-9040627 27 9.5
>08_02_1145 -
24674319-24674403,24674691-24674746,24674885-24674965,
24675063-24675137,24675418-24675479,24675857-24675950,
24676674-24676762,24676864-24677194
Length = 290
Score = 106 bits (254), Expect = 1e-23
Identities = 57/155 (36%), Positives = 85/155 (54%), Gaps = 14/155 (9%)
Frame = +2
Query: 2 VSEHWTRLRAQE-------------GSPQTVIGAVIGKQKGRNIEVMNSFELVFSVXXXX 142
VS+H TR++AQ G P V G VIG Q+GR +E+ NSFELV
Sbjct: 39 VSDHHTRVKAQAACSGDGASSAAAGGQPPRVFGCVIGVQRGRTVEIFNSFELVLDPVSGT 98
Query: 143 XXXXXXYYNLKEEQFKQVFSEMDFLGWYTTGDTPTERDIAVHRQICDINDCPVMLMLNPA 322
+ K+E +K+VF + LGWY+TG + D+ +H+ + DIN+ PV L+LNPA
Sbjct: 99 LDRA--FLEKKQELYKKVFPDFYVLGWYSTGSDVRDTDMQIHKALMDINESPVYLLLNPA 156
Query: 323 -GRNGEQLPVVLYESVIDVVNGRATMLLAPLTYTL 424
+ + LPV +YES + V++G ++ YT+
Sbjct: 157 INLSQKDLPVTIYESELHVIDGSPQLIFVRANYTI 191
>12_02_1159 +
26585042-26585441,26585520-26585608,26585670-26585720,
26586189-26586282,26586451-26586512,26586589-26586671,
26586793-26586901,26587010-26587051,26587152-26587316,
26588165-26588341,26588820-26588984,26589069-26589332
Length = 566
Score = 51.6 bits (118), Expect = 4e-07
Identities = 41/163 (25%), Positives = 67/163 (41%), Gaps = 18/163 (11%)
Frame = +2
Query: 44 PQTVIGAVIGKQKGRNIEVMNSFELVFSVXXXXXXXXXXYYNLKEEQFKQVFSEMDFLGW 223
P + G VIG Q+GR +EV+++ +++ + K E +K+ F + LGW
Sbjct: 89 PPRMYGCVIGVQRGRTVEVVDTSDIL--LDTDPGTLDRDLLKKKLETYKKAFPGLAILGW 146
Query: 224 YTTGDTPTERDIAVHRQ-----------------ICDINDCPVMLMLNPA-GRNGEQLPV 349
Y+ T D+ ++ + D + L+ NPA + + LPV
Sbjct: 147 YSIDTHVTNTDMETNQATVIWLSVWSYYEEMLLLLMDASGTTFYLLFNPAMNLSLKDLPV 206
Query: 350 VLYESVIDVVNGRATMLLAPLTYTLAAEEAERIGVDHVARVSS 478
+YE V ++ Y EAERI +DH V S
Sbjct: 207 TIYEKVHSTNRSPTPLIFVQGKYKTETVEAERISLDHTCPVVS 249
>04_04_0270 - 24061852-24063264
Length = 470
Score = 31.5 bits (68), Expect = 0.44
Identities = 20/48 (41%), Positives = 29/48 (60%)
Frame = -1
Query: 456 STPILSASSAAKVYVSGANSIVALPFTTSITDSYNTTGSCSPFLPAGF 313
S+ + ++SSAA VS A+S ++LP S++D TGS S L A F
Sbjct: 39 SSTVSTSSSAAAAAVSEASSSMSLPSLPSLSD---VTGSMSASLAASF 83
>01_06_0544 +
30118208-30118417,30118959-30119063,30119179-30119260,
30119415-30121250,30121327-30121445,30121563-30122006
Length = 931
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 416 YTLAAEEAERIGVDHVARVSSGEAALNSLVAEHLTAQR 529
+ L E IG HV +V + A++N++ A LTA+R
Sbjct: 443 FKLVDRYIEEIGEQHVVQVVTDNASVNTIAASLLTAKR 480
>08_01_0486 + 4262065-4262346
Length = 93
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 302 MLMLNPAGRNGEQLPVVLYESVIDVVNGRATMLLA 406
ML++ P+ +G QLP E+ VNGR+T+L A
Sbjct: 30 MLLVLPSPPSGRQLPSEEEEAAPCAVNGRSTILAA 64
>12_02_0642 +
21454142-21454251,21454683-21454872,21454988-21455069,
21455224-21455802,21455854-21456909,21457133-21457251,
21457369-21457812
Length = 859
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 416 YTLAAEEAERIGVDHVARVSSGEAALNSLVAEHLTAQR 529
+ L E IG HV +V + A++N+ A LTA+R
Sbjct: 421 FELVDRYIEEIGEQHVVQVVTDNASVNTTAASLLTAKR 458
>12_02_0639 +
21443480-21443589,21444022-21444211,21444327-21444408,
21444563-21445054,21445221-21446246,21446470-21446588,
21446706-21447149
Length = 820
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 416 YTLAAEEAERIGVDHVARVSSGEAALNSLVAEHLTAQR 529
+ L E IG HV +V + A++N+ A LTA+R
Sbjct: 382 FELVDRYIEEIGEQHVVQVVTDNASVNTTAASLLTAKR 419
>12_02_0633 +
21402847-21402862,21403143-21404975,21405052-21405170,
21405288-21405722
Length = 800
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 416 YTLAAEEAERIGVDHVARVSSGEAALNSLVAEHLTAQR 529
+ L E IG HV +V + A++N+ A LTA+R
Sbjct: 316 FELVDRYIEEIGEQHVVQVVTDNASVNTTAASLLTAKR 353
>10_08_0848 +
21035446-21035461,21035742-21036233,21036400-21036956,
21037084-21037539,21037886-21038302
Length = 645
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 416 YTLAAEEAERIGVDHVARVSSGEAALNSLVAEHLTAQR 529
+ L E IG HV +V + A++N+ A LTA+R
Sbjct: 260 FELVDRYIEEIGEQHVVQVVTDNASVNTTAASLLTAKR 297
>05_03_0187 +
9413575-9414895,9415014-9415289,9415513-9415631,
9415749-9416192
Length = 719
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 416 YTLAAEEAERIGVDHVARVSSGEAALNSLVAEHLTAQR 529
+ L E IG HV +V + A++N+ A LTA+R
Sbjct: 320 FELVDRYIEEIGEQHVVQVVTDNASVNTTAASLLTAKR 357
>05_03_0065 -
7953414-7953845,7953963-7954081,7954158-7955990,
7957103-7957559
Length = 946
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 416 YTLAAEEAERIGVDHVARVSSGEAALNSLVAEHLTAQR 529
+ L E IG HV +V + A++N+ A LTA+R
Sbjct: 463 FELVDRYIEEIGEQHVVQVVTDNASVNTTAASLLTAKR 500
>01_04_0076 +
15780981-15780996,15781277-15783109,15783186-15783304,
15783422-15783724
Length = 756
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 416 YTLAAEEAERIGVDHVARVSSGEAALNSLVAEHLTAQR 529
+ L E IG HV +V + A++N+ A LTA+R
Sbjct: 316 FELVDRYIEEIGEQHVVQVVTDNASVNTTAASLLTAKR 353
>01_01_0247 + 2023019-2023802,2023894-2023997
Length = 295
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 426 AKVYVSGANSIVALPFTTSITDSYNTTGSCSPF 328
A V + A ++ LP +S D+ NTT + SPF
Sbjct: 8 ASVVLCLAMLLLTLPIASSTVDAINTTNTTSPF 40
>08_02_1285 - 25881091-25881798
Length = 235
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1
Query: 513 CSATKLLRAASPDDTLATWSTPILSASSAAKVYVSGANSIV 391
C ATK+ R DD A + A SAA+V G ++V
Sbjct: 39 CRATKMRRLVRDDDAAAADDVAMGEAPSAAEVAAVGEGAMV 79
>08_02_1280 +
25846557-25846871,25847278-25847349,25847441-25847599,
25847971-25848099,25848194-25848310,25848434-25848535,
25848759-25848917,25849090-25849464
Length = 475
Score = 27.5 bits (58), Expect = 7.2
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
Frame = +2
Query: 221 WYTTGDTPTERD----IAVHRQICDINDCPVMLMLNPAGRNGEQLPVVLYESVIDVVNGR 388
W TP ER+ + + + D +++ +P+G +G Q V Y + ++G
Sbjct: 278 WALVIGTPKEREGIISAPLSKVLLDDGKAERVILAHPSGIDGAQEAVTAYRVMGPTIHGC 337
Query: 389 ATMLLAPLT---YTLAAEEAERIGVDHVARVSSG 481
+ + L PLT + L AE +G V G
Sbjct: 338 SWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYG 371
>02_05_0800 + 31822424-31822550,31823408-31823502,31823928-31824173
Length = 155
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -2
Query: 359 HTTQLAAVLHFFLQGLTLTSQGNHLYHISACGRR 258
H LA+ LH F T S GN L S C RR
Sbjct: 11 HRRSLASHLHPFFSLWTARSGGNELVQSSFCDRR 44
>11_04_0349 + 16651344-16651868
Length = 174
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = -2
Query: 365 LIHTTQLAAVLHFFL--QGLTLTSQGNHLYHISACGRRCRAL*VCHQLCTSP 216
L + AA L F L G+ +G + H A GRRCR +L T P
Sbjct: 61 LTYVAAAAAALFFLLFPLGVVFVRRGEEISHGCARGRRCRRF---RELATHP 109
>07_01_1039 - 9037689-9038225,9038831-9040627
Length = 777
Score = 27.1 bits (57), Expect = 9.5
Identities = 20/51 (39%), Positives = 26/51 (50%)
Frame = -1
Query: 519 VKCSATKLLRAASPDDTLATWSTPILSASSAAKVYVSGANSIVALPFTTSI 367
V C AT LL A + S P+L A +AAKV + A+S A+ T I
Sbjct: 86 VLCGATHLLAAFTHAHP---HSAPLLRALTAAKVLAAVASSAAAVSLLTFI 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,362,656
Number of Sequences: 37544
Number of extensions: 282690
Number of successful extensions: 743
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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