Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_J04
         (624 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1312 - 36205549-36206649,36207558-36207883,36209083-362091...    29   3.0  
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108...    28   5.2  
01_03_0208 + 13797780-13797931,13798234-13798288,13798807-13799943     27   9.2  

>01_06_1312 - 36205549-36206649,36207558-36207883,36209083-36209198,
            36210472-36211577
          Length = 882

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 23/94 (24%), Positives = 40/94 (42%)
 Frame = -2

Query: 590  LQKFIQXXXXX*YALRLQWRASISFLVLELCLILFHMLARVILFHVILYLIVKP*FYVAL 411
            L  F+        A  L W A ++  VL   L+    +  ++L +++ YL++     + L
Sbjct: 780  LPMFVAFLSVVEGAAILSWAAFVARFVLHDALLSVDQIGHIMLCYIVPYLVISFFLLLLL 839

Query: 410  VNCRFPGTLFIVLFLDYNLLLKI*ITYCIYDLSV 309
                F G      FL + ++L I      Y+LSV
Sbjct: 840  TGVGFAGETIGATFL-WCMMLSI-AGLLGYELSV 871


>05_01_0160 +
           1081416-1081647,1081840-1082012,1082169-1082246,
           1082372-1082529,1082558-1082709,1083232-1083290,
           1083633-1083912,1084235-1084470,1084601-1084744,
           1084845-1085012
          Length = 559

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -2

Query: 503 LCLILFHMLARVILFHVILYLIVKP*FYVALVNCRFPGTLFIVLFL 366
           LC+ LF +L  + +   + Y+  +     A++   FPG L +V+ L
Sbjct: 163 LCVSLFRVLLAIAVIDALSYVGTRDGDSYAVLTANFPGQLIVVVSL 208


>01_03_0208 + 13797780-13797931,13798234-13798288,13798807-13799943
          Length = 447

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 545 RLQWRASISFLVLELCLILFHMLARVIL 462
           RL W    S L++ LC+IL   LA VIL
Sbjct: 143 RLAWLVLASKLLIHLCVILLMALAFVIL 170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,876,060
Number of Sequences: 37544
Number of extensions: 280813
Number of successful extensions: 501
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)