Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_J02
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...   156   2e-39
SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces...    27   1.2  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   1.2  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    27   1.6  
SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces...    25   3.8  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   3.8  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    25   5.0  
SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1 |Schizosaccharo...    25   6.6  
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ...    24   8.7  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    24   8.7  
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom...    24   8.7  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score =  156 bits (378), Expect = 2e-39
 Identities = 77/145 (53%), Positives = 106/145 (73%), Gaps = 2/145 (1%)
 Frame = +3

Query: 3   KILKAGAIEPDTFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 176
           KI+K  + +P   +  ++Q L +LE++S D+  +LR L IT A+E+E+   KK+I+++VP
Sbjct: 6   KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65

Query: 177 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 356
            P LKAF K Q RL RELEKKF+ +HV+F+  R+ILPKP  K+RV   QKRPRSRTLT+V
Sbjct: 66  QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAV 123

Query: 357 YDAXLEDLVFPAEIVGKRIRVKLDG 431
           ++A LED+VFP EI+GKR R   DG
Sbjct: 124 HNAILEDIVFPTEIIGKRTRQATDG 148


>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 118

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +3

Query: 33  DTFETSISQALVELETNSDLKAQLRELYITKAKEIEL 143
           +T+E  I + L++L + S++  Q+  ++I    E+E+
Sbjct: 78  ETYEMRIHKRLIDLHSPSEIVKQITSIHIEPGVEVEV 114


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +3

Query: 9    LKAGA-IEPDTFETSISQALVE--LETNSDLKAQLRELY 116
            +KA A I+PD FE +I Q L +     N  LK ++ +LY
Sbjct: 2123 VKANAFIDPDNFEVNIEQTLSKNFFGNNQYLKLKIMQLY 2161


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +3

Query: 165 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 257
           +++P  K   F+KI+  +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130


>SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = +3

Query: 222 RELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAXLEDLVFPAEIV 401
           ++LEK+F G       +  + PK     +   K    RSR L   + A + + VF     
Sbjct: 108 KDLEKQFPGYDYTACHEDPVFPKKEKIYKADYKTSIQRSRVLAEFF-AKVPEKVFAVVTH 166

Query: 402 GKRIRV 419
           G  IR+
Sbjct: 167 GVDIRL 172


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 6    ILKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIEL 143
            I + G +  +TF+  +SQA ++    + L   +RE ++    E +L
Sbjct: 3170 ISRLGVVSKNTFQLPMSQANIQRFAENVLPVSVREAFLRDFVETKL 3215


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 285 PKPSHKTRVANKQKRPRSRTLTSVYDAXLEDLVFPAEIVGKR 410
           P  S + R  N+++  RSR   S + + LED+++    V  R
Sbjct: 49  PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLGPQVSTR 90


>SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 325

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +3

Query: 9   LKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIE 140
           L   A+E  T E  +    V +   S LKA +++  + K  E++
Sbjct: 92  LLKSAVETITLENGLRNRRVNVTKKSTLKASVKKSTLKKKNEVD 135


>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 365 GVIYRSQCPGTGPFLFV 315
           G+IYRS CP    F F+
Sbjct: 68  GIIYRSACPRASNFNFL 84


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 329 PFLFVGYTCLVAGLGQDLTVTNEHNM 252
           P ++VGY   VAG+G  + V    +M
Sbjct: 424 PLIYVGYISCVAGMGAMICVNATTSM 449


>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -2

Query: 244 LNFFSNSRTSLIWIFWNAFS 185
           L  F+  R S +W  WN  S
Sbjct: 234 LGIFAKKRFSFLWFLWNTSS 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,754,077
Number of Sequences: 5004
Number of extensions: 35013
Number of successful extensions: 103
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)