Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_J02
(431 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 147 3e-36
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 130 6e-31
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 73 1e-13
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168 30 0.70
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634... 29 2.1
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628... 29 2.1
04_04_0378 - 24822436-24822521,24822623-24822738,24823010-248230... 28 2.8
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639... 28 3.7
12_01_0191 + 1413287-1413346,1413504-1413632,1416819-1416998,141... 27 6.5
06_01_0793 - 5918912-5919793,5919830-5920285 27 6.5
02_01_0293 + 1955439-1956457,1957002-1957322,1957405-1957411,195... 27 6.5
01_01_0823 - 6407635-6407731,6407786-6407857,6409766-6409872 27 6.5
07_01_0180 + 1266975-1267550 27 8.6
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 147 bits (357), Expect = 3e-36
Identities = 76/145 (52%), Positives = 106/145 (73%), Gaps = 2/145 (1%)
Frame = +3
Query: 3 KILKAGAIEPDTFETSISQALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 176
KI K +EP FE S++QA +LE N +LK++L++LYI A ++++ N+K+++I+VP
Sbjct: 7 KIQKEKGLEPSEFEDSVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVVIHVP 66
Query: 177 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 356
KAF+KI +RLVRELEKKFSGK VV V R+I+ P + V +RPR+RTLT+V
Sbjct: 67 YRLRKAFKKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRTLTAV 122
Query: 357 YDAXLEDLVFPAEIVGKRIRVKLDG 431
+D LED+V+PAEIVGKRIR +LDG
Sbjct: 123 HDGILEDVVYPAEIVGKRIRYRLDG 147
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 130 bits (313), Expect = 6e-31
Identities = 69/127 (54%), Positives = 92/127 (72%), Gaps = 2/127 (1%)
Frame = +3
Query: 57 QALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVREL 230
QA +LE N +LK+ L++LYI A +++L N+K++IIYVP KA++KI +RLVREL
Sbjct: 38 QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97
Query: 231 EKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAXLEDLVFPAEIVGKR 410
EKKFSGK VV V R+I+ P + V RPR+RTLT+V+D LED+V+PAEIVGKR
Sbjct: 98 EKKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILEDVVYPAEIVGKR 153
Query: 411 IRVKLDG 431
+R LDG
Sbjct: 154 VRYHLDG 160
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 72.9 bits (171), Expect = 1e-13
Identities = 41/98 (41%), Positives = 62/98 (63%)
Frame = +3
Query: 111 LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPK 290
+Y+ ++ N K ++I+V KAF+KI +RLV+ELEKKFSGK VVF R+I+ +
Sbjct: 31 MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-R 88
Query: 291 PSHKTRVANKQKRPRSRTLTSVYDAXLEDLVFPAEIVG 404
P +K + PR+RTL +V+D LED+V ++G
Sbjct: 89 PLNKGSAVH---HPRTRTLITVHDGILEDVVSQLRLLG 123
>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
Length = 336
Score = 30.3 bits (65), Expect = 0.70
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -2
Query: 325 FCLLATRVLWLGLGRILRSPTNTTCLPLNFFSNSRTSLI 209
F L A+ L L L +L T+ CLPL FF+ + SL+
Sbjct: 4 FSLFASLSLSLSLSFVLADITDNPCLPLIFFAGNLISLM 42
>04_01_0483 +
6343599-6343778,6343886-6344011,6344096-6344173,
6344859-6344984,6345253-6345354,6345425-6345571,
6345861-6345984,6346992-6347152
Length = 347
Score = 28.7 bits (61), Expect = 2.1
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = +3
Query: 63 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 197
LVE+ D ++ + Y+ + L++K +++Y+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPHRVRLYSKDDVLLYIKEMKISGF 157
>04_01_0480 +
6279576-6279755,6279863-6279988,6280074-6280151,
6280847-6280972,6281244-6281345,6281416-6281490,
6281852-6281975,6283005-6283107,6283546-6283617,
6283662-6283788,6284125-6284180,6284438-6284453
Length = 394
Score = 28.7 bits (61), Expect = 2.1
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +3
Query: 63 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 197
LVE+ D ++ + Y+ + L +K ++IY+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYIKEMKISGF 157
>04_04_0378 -
24822436-24822521,24822623-24822738,24823010-24823092,
24823772-24823918,24824004-24824051,24824153-24824353,
24824981-24825152,24825235-24825299,24825813-24825939,
24826436-24826528,24826608-24826696,24826804-24826950,
24827047-24827359,24827474-24828048
Length = 753
Score = 28.3 bits (60), Expect = 2.8
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +3
Query: 3 KILKAGAIEPDTFET--SISQALVELETNSDLKAQLRELYITKAKEIELHN 149
K LK +E D E ISQAL L + S + + +E KEIEL+N
Sbjct: 565 KELKKAKVEHDRKEQLCDISQALAVLASASSVAKERQEFLNLVNKEIELYN 615
>04_01_0485 +
6389646-6389665,6390063-6390123,6390231-6390356,
6390441-6390518,6391304-6391429,6391630-6391731,
6391802-6391948,6392237-6392360,6393608-6393737,
6393908-6394130
Length = 378
Score = 27.9 bits (59), Expect = 3.7
Identities = 10/45 (22%), Positives = 22/45 (48%)
Frame = +3
Query: 63 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 197
LVE+ D ++ + Y+ + L +K +++Y+ K+ F
Sbjct: 80 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLLYIKEMKISGF 124
>12_01_0191 +
1413287-1413346,1413504-1413632,1416819-1416998,
1417747-1417938,1418533-1418673,1418785-1418912,
1419088-1419262,1419664-1419852,1420628-1420749,
1420829-1420874
Length = 453
Score = 27.1 bits (57), Expect = 6.5
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 330 PRSRTLTSVYDAXLEDLVFPAEIVGKRI 413
P +RTLT+ +D L+D + A+I GK +
Sbjct: 86 PNTRTLTNAHDGILDD-INCAQIAGKHV 112
>06_01_0793 - 5918912-5919793,5919830-5920285
Length = 445
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 211 SGLSVS*KRSSAVSMLCSLVTVRSCP 288
SG+SV+ KR S C+L +RSCP
Sbjct: 166 SGMSVA-KRCSLAMERCTLAAMRSCP 190
>02_01_0293 +
1955439-1956457,1957002-1957322,1957405-1957411,
1957954-1958041,1958143-1958324,1958508-1958644,
1958790-1958856,1959132-1959246,1959390-1959501,
1960420-1960495,1960576-1960758,1961166-1961326,
1961463-1961532,1962721-1962928,1963015-1963304,
1963388-1963509,1963605-1963749,1964040-1964113,
1964464-1964911
Length = 1274
Score = 27.1 bits (57), Expect = 6.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -3
Query: 342 SWNGAFSVCWLHVSCGWAWAGSYG 271
S G +CW+H + GW A +G
Sbjct: 146 SGGGVQDLCWIHHASGWLLASIHG 169
>01_01_0823 - 6407635-6407731,6407786-6407857,6409766-6409872
Length = 91
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 60 ALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY 170
A++E+E N DL + L T+ E H + S++IY
Sbjct: 2 AILEIEDNDDLLSLPGSLANTRIGESPSHQRDSLLIY 38
>07_01_0180 + 1266975-1267550
Length = 191
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -2
Query: 379 RSSNXASYTEVSVLERGLFCLLATRVLWLGLGRILRSPTN 260
R +N + E VL R L + +GL R+LRS N
Sbjct: 131 RGANARHHAEAGVLRRRLGEAQRNAAVLIGLSRLLRSTAN 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,623,341
Number of Sequences: 37544
Number of extensions: 237835
Number of successful extensions: 657
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -