Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_J01
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    27   2.3  
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    27   2.3  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    27   3.1  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    26   4.1  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    26   5.4  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   7.1  

>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +3

Query: 432 DTMSKTLYANAVF-VDIHSKLRDVFQDYLTRIYKGRAVNVDFSRETEVKETINEWV 596
           D    T Y +A   +D    +RD+F+ Y TRI+       + S    +  + N++V
Sbjct: 693 DRKKLTFYYHAKQRIDFRELVRDLFKVYKTRIWMCAVSGTNMSSPASINASTNQFV 748


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 313 VALEIPMMNLLAPSVFPKMF*QTVKATSI 399
           +A  +PM N+    + PK F +T+K T +
Sbjct: 546 IAAPLPMANVDTDKIIPKQFLKTIKRTGL 574


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 351 LGFSQDVLANRQSHEYFSELIHNLNTN 431
           +G S DV+ +   H YF  +I NL  N
Sbjct: 190 VGVSNDVMGSVPHHPYFELIIQNLEKN 216


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/55 (23%), Positives = 24/55 (43%)
 Frame = +3

Query: 402 SELIHNLNTNDTMSKTLYANAVFVDIHSKLRDVFQDYLTRIYKGRAVNVDFSRET 566
           +E IH L   + +++T +AN     +   +      YL + YK   +N   +  T
Sbjct: 198 AETIHGLRLGNNLTRTFWANDEPSPVDQNMYGSHPYYLEQRYKADGINSTLNETT 252


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
 Frame = -3

Query: 266  NNVFIFVL--LHLLY*NFISQIVHRIC*VPIIY----YGSGNFFIIRLMRIPRTPIQKYY 105
            NNVF+F+L    L+Y      ++H +  +   +    Y    FF+  + + P  P  KY+
Sbjct: 1073 NNVFLFLLSFYSLIYGAEKPYLIHNVVGLYFFWLLFLYAKNGFFVQNISKWPIIPRMKYF 1132


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 19/74 (25%), Positives = 37/74 (50%)
 Frame = -1

Query: 622 SIFPSVRSFTHSLIVSLTSVSRLKSTLTALPL*ILVR*S*NTSRSLLCMSTNTALA*SVF 443
           S  PS  S   +   SL++++    +LTA+     +  S N+S  +   S+NT L+ S+ 
Sbjct: 697 SPIPSSSSLVSTYSASLSNITHSSLSLTAMSSSSAIPTSVNSSTLITASSSNTLLS-SIT 755

Query: 442 DIVSLVLRLCISSL 401
              ++V    +S++
Sbjct: 756 SSSAIVSSTTVSNI 769


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,443,099
Number of Sequences: 5004
Number of extensions: 48404
Number of successful extensions: 156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)