Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_J01
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0824 - 32243495-32244319,32244449-32244859 49 3e-06
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 39 0.004
11_01_0767 + 6438648-6438809,6439146-6440000 38 0.007
11_01_0750 - 6315126-6315896,6316371-6316784 35 0.048
03_05_0294 + 22855503-22855946,22856346-22856399 33 0.26
04_04_0619 + 26652923-26653267,26653440-26654273 32 0.34
11_02_0011 - 7337618-7338496,7338596-7338991 31 1.0
11_02_0012 - 7346282-7347136,7347234-7347593 29 3.2
01_06_1676 - 39084928-39085016,39085462-39085555,39085664-390857... 29 3.2
04_04_1432 - 33558895-33559023,33559215-33559286,33559405-335594... 29 4.2
03_05_0003 - 19430085-19430210,19430902-19431060,19431269-194313... 28 7.4
11_04_0004 + 12013207-12013280,12013311-12013756,12013865-12014715 27 9.7
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 49.2 bits (112), Expect = 3e-06
Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 4/134 (2%)
Frame = +3
Query: 252 NENIVISPXXXXXXXXXXXXXSVGNTYDELASALG-FSQDVLANRQSHEYFSELIHNLNT 428
++N+ +SP + G T D++ + LG A SH L +
Sbjct: 31 DKNLAVSPLSLHAALALLGAGARGETLDQIIAFLGPAGGPAHAALASHVALCSLADDSGP 90
Query: 429 NDTMS--KTLYANAVFVDIHSKLRDVFQDYLTRIYKGRAVNVDF-SRETEVKETINEWVK 599
D K +AN V+VD +L+ + + Y+ A V F + E + INEW +
Sbjct: 91 GDDRGGPKVRFANGVWVDAALRLKAAYARVVADKYRAEARPVSFRDKLEEARREINEWFE 150
Query: 600 ERTEGKIENFLKEN 641
T G+I++FL ++
Sbjct: 151 SATAGRIKDFLPKD 164
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 38.7 bits (86), Expect = 0.004
Identities = 27/99 (27%), Positives = 38/99 (38%)
Frame = +3
Query: 258 NIVISPXXXXXXXXXXXXXSVGNTYDELASALGFSQDVLANRQSHEYFSELIHNLNTNDT 437
N+ SP + G T D+LASALG E +L+ +
Sbjct: 36 NVAFSPLSLHVALSLVAAGAGGATRDQLASALGGPGSAEGLHAFAEQLVQLVLADASGAG 95
Query: 438 MSKTLYANAVFVDIHSKLRDVFQDYLTRIYKGRAVNVDF 554
+ +A+ VFVD L+ F D YK +VDF
Sbjct: 96 GPRVAFADGVFVDASLSLKKTFGDVAVGKYKAETHSVDF 134
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 453 YANAVFVDIHSKLRDVFQDYLTRIYKGRAVNVDF-SRETEVKETINEWVKERTEGKIENF 629
+A ++D L+ ++D + YKG A VDF + E ++ IN WV T+ I
Sbjct: 18 FACGSWLDASYSLKPAYRDAIVGTYKGAASTVDFKNHPVEARKEINAWVARATKNLITEV 77
Query: 630 LK 635
+K
Sbjct: 78 IK 79
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 35.1 bits (77), Expect = 0.048
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +3
Query: 453 YANAVFVDIHSKLRDVFQDYLTRIYKGRAVNVDFSRETE-VKETINEWVKERTEGKIENF 629
+A V+ D L F +Y A DF + E + IN WVK+ T+G +
Sbjct: 102 FAGGVWADASRSLSPEFVGLAGNVYGSAAKKADFKNKPEDAPDQINSWVKDSTKGTVTTL 161
Query: 630 L 632
L
Sbjct: 162 L 162
>03_05_0294 + 22855503-22855946,22856346-22856399
Length = 165
Score = 32.7 bits (71), Expect = 0.26
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 3/102 (2%)
Frame = +3
Query: 258 NIVISPXXXXXXXXXXXXXSVGNTYDELASALGFSQDVLANRQSHEYFSELIHNLNTNDT 437
N+ SP + G T D+L S LG A H + +++ + + +
Sbjct: 45 NVAFSPLSLHVALSLVAAGAGGATRDQLVSLLGVPGRGTAEGL-HAFAEQVVQLVLADSS 103
Query: 438 MS---KTLYANAVFVDIHSKLRDVFQDYLTRIYKGRAVNVDF 554
+ + +A+ VF+D L F+D YK +VDF
Sbjct: 104 PAGGPRVAFADGVFIDSSLSLMKSFKDVAVGKYKAETHSVDF 145
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 32.3 bits (70), Expect = 0.34
Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 1/127 (0%)
Frame = +3
Query: 249 KNENIVISPXXXXXXXXXXXXXSVGNTYDELASALGFSQDVLANRQSHEYFSELIHNLNT 428
+ N + SP + G T +L + LG SQ + Q + + L+ +
Sbjct: 18 EQSNFMFSPLGLRAGLALLATGTDGETLRQLLAFLG-SQHI---HQLNAASAGLLAEMRA 73
Query: 429 NDTMSKTLYANAVFVDIHSKLRDVFQDYLTRIYKGRAVNVDFSRETEVKET-INEWVKER 605
+S +A +FVD +LR FQ + +VDF + +N ++ +
Sbjct: 74 WPQLS---FAAGIFVDRSLRLRPEFQSTAAAAHGAFPRSVDFQNQANAAAAEVNRFISQA 130
Query: 606 TEGKIEN 626
T G++ N
Sbjct: 131 TNGRLNN 137
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 30.7 bits (66), Expect = 1.0
Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 2/133 (1%)
Frame = +3
Query: 246 NKNENIVISPXXXXXXXXXXXXXSVGNTYDELASALG-FSQDVLANRQSHEYFSELIHNL 422
+ N+N+V SP + G T DEL + LG S D L +S E+
Sbjct: 28 SSNKNLVFSPASLYAALALVAAGARGTTLDELLALLGAASLDDL--EESVRRAVEVGLAD 85
Query: 423 NTNDTMSKTLYANAVFVDIHSKLRDVFQDYLTRIYKGRAVNVDFSRETE-VKETINEWVK 599
+ + A V+ D +L+ ++ YK +F R+ + ++ IN+WV
Sbjct: 86 ESASGGPRVSDACGVWHDETLELKPAYRAAAAGTYKAVTRAANFQRQPKRSRKKINKWVS 145
Query: 600 ERTEGKIENFLKE 638
+ T I L +
Sbjct: 146 KATNKLIPEILPD 158
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +3
Query: 246 NKNENIVISPXXXXXXXXXXXXXSVGNTYDELASALG 356
N N N+V SP + G T DEL + LG
Sbjct: 28 NSNRNVVFSPVSLYAALALVASGARGTTLDELVALLG 64
>01_06_1676 -
39084928-39085016,39085462-39085555,39085664-39085750,
39085941-39086073,39086451-39086724,39086863-39086989,
39087095-39087345,39087476-39087575
Length = 384
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Frame = +3
Query: 141 ETNDEKVTTSIINDGNLA---YSVNDLGYKILIQKMQQNKNE 257
E D+ ++++I +G+ Y+V D G KI ++K+ N+NE
Sbjct: 68 EKTDDFGSSALIGEGSYGRVYYAVLDSGTKIAVKKLDSNENE 109
>04_04_1432 -
33558895-33559023,33559215-33559286,33559405-33559494,
33559574-33559618,33559693-33559788,33559905-33559956,
33560044-33560132,33560226-33560342,33560448-33560534,
33560646-33560761,33560854-33560878,33561816-33562121
Length = 407
Score = 28.7 bits (61), Expect = 4.2
Identities = 9/38 (23%), Positives = 23/38 (60%)
Frame = +3
Query: 489 LRDVFQDYLTRIYKGRAVNVDFSRETEVKETINEWVKE 602
L+D+F +Y +R+YK +D + +++ + ++K+
Sbjct: 364 LQDIFLEYESRVYKHLVSTIDAETDRAIRDILKSFLKK 401
>03_05_0003 -
19430085-19430210,19430902-19431060,19431269-19431358,
19431433-19431603,19431655-19431797,19431831-19431923,
19431963-19432279,19432819-19432885,19433039-19433204
Length = 443
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 123 SSGNSHETNDEKVTTSIINDGNLAYSVND 209
SSG SH +DE+ T + D NL V D
Sbjct: 90 SSGGSHHGSDEEEVTMPVFDANLLAGVKD 118
>11_04_0004 + 12013207-12013280,12013311-12013756,12013865-12014715
Length = 456
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 123 SSGNSHETNDEKVTTSIINDGNLAYSVND 209
SSG SH +DE+ T + D NL V D
Sbjct: 37 SSGGSHHGSDEEDVTMPVFDANLPAGVKD 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,039,083
Number of Sequences: 37544
Number of extensions: 257050
Number of successful extensions: 532
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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