Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_I24
(506 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 29 0.40
SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi... 29 0.53
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa... 27 1.2
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 25 4.9
SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces p... 25 4.9
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 25 4.9
SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 6.5
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po... 25 6.5
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 25 6.5
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha... 25 8.6
SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c... 25 8.6
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 29.1 bits (62), Expect = 0.40
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = -2
Query: 289 FYCPHCIVLNLRSHQRLKNK 230
FYCP+C++LN + ++ L ++
Sbjct: 162 FYCPNCVLLNYQENETLSSR 181
>SPAC1851.02 |||1-acylglycerol-3-phosphate
O-acyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 279
Score = 28.7 bits (61), Expect = 0.53
Identities = 12/34 (35%), Positives = 24/34 (70%)
Frame = +2
Query: 161 IL*KKNLRFVNLLGWPLVVT*SIFILQSLMTSQI 262
++ KK+LR+V +LGW ++++ +FI +S + I
Sbjct: 126 VIAKKSLRYVPILGWFMILSDVVFIDRSRRSDAI 159
>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 422
Score = 27.5 bits (58), Expect = 1.2
Identities = 7/27 (25%), Positives = 18/27 (66%)
Frame = -3
Query: 375 FICW*IYFLSHHFADRIYGKVFISLVC 295
++CW +L+HH+ + G + ++++C
Sbjct: 283 WLCWCTMYLTHHYFVDLVGGMCLAIIC 309
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.4 bits (53), Expect = 4.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 345 HHFADRIYGKVFISLVCTYSIVLIVLY 265
H R YG V I L+CT ++ +V+Y
Sbjct: 716 HSKCHRKYGHV-IELICTLLLIFVVIY 741
>SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 4.9
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 301 QRYKNLTINTVC-KMMTEEVNLPAYKRLAKFNTIVLNKSNQTCMDYSYDHM 450
Q YKNL +TV K+ + P +++NTI+++ S C + Y+H+
Sbjct: 121 QTYKNL--DTVWEKIHHDSTGKPV--SWSQYNTIIVDDSKTKCAAHPYNHI 167
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 25.4 bits (53), Expect = 4.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 212 REANPKDLQTLNSFSIISGDFVIKSVI 132
RE P + LN+F + +GD V+K+ +
Sbjct: 562 RELPPASVNALNNFRLANGDPVLKTYL 588
>SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 25.0 bits (52), Expect = 6.5
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = -2
Query: 376 FYMLVNLLPQSSFCRPYLW*GFYISGLHLFYCPHCIVLNLRSHQR 242
F++ V+L + P LW I G+H F C + L + ++
Sbjct: 94 FFIWVSLRLRKKARDPVLWVAILIYGVHAFTTTWCCMFELFAEKK 138
>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 25.0 bits (52), Expect = 6.5
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -3
Query: 183 LKFFFYNIRRLCHQISYXTMSKFQLCNTIFS 91
L +F YN RL + Y ++ +C +FS
Sbjct: 278 LAYFIYNCARLYLGVDYGDIAVANICMLVFS 308
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.0 bits (52), Expect = 6.5
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 334 CKMMTEEVNLPAYKRLAKFNTIVLNKSNQTCMDYSYDHMIK 456
CK+ E KRL K T +NKSN+ + + D K
Sbjct: 175 CKLAYEFFPKDLRKRLQKLETEDMNKSNRKLLQDATDEYAK 215
>SPCC1322.14c |vtc4||vacuolar transporter chaperone
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 24.6 bits (51), Expect = 8.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 383 ANLLYAGKFTSSVIILQTVFMVRFLYLWSAL 291
+ +L A FT ++ L +F FLYLW A+
Sbjct: 656 SGILGAASFT--LVALFAIFYSTFLYLWRAV 684
>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 219
Score = 24.6 bits (51), Expect = 8.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 344 IILQTVFMVRFLYLWSALILLS 279
IIL V ++RF +LW AL+ ++
Sbjct: 149 IILGIVAIIRFEFLWLALVAVA 170
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,115,358
Number of Sequences: 5004
Number of extensions: 41506
Number of successful extensions: 117
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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