Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_I24
         (506 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0704 + 6219530-6219609,6221595-6222243,6222339-6222437,622...    30   0.93 
02_02_0578 + 11745811-11746013,11749902-11750241,11750325-117505...    29   1.6  
04_01_0075 - 838358-838945,847120-847282,847581-847687                 28   3.7  
02_05_0106 - 25877997-25878677,25878951-25879222,25879317-25879476     27   6.5  
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593...    27   6.5  
07_01_0706 - 5325073-5326038                                           27   8.7  

>08_01_0704 + 6219530-6219609,6221595-6222243,6222339-6222437,
            6222521-6222616,6222750-6222848,6222929-6223027,
            6223811-6223882,6224508-6224597,6225173-6227329
          Length = 1146

 Score = 30.3 bits (65), Expect = 0.93
 Identities = 17/71 (23%), Positives = 32/71 (45%)
 Frame = +1

Query: 205  ASRSDMINFYSSIADDFADLVQYNEDNRISADQRYKNLTINTVCKMMTEEVNLPAYKRLA 384
            A+R +++N + S   D  + +Q  +DN  +  Q  +  T+N +  M     + P + +  
Sbjct: 893  ANRENVVNHFQSRQADTVNHIQVIQDNTANQFQFRRADTVNKIQTMQDSTTDQPRFIQAL 952

Query: 385  KFNTIVLNKSN 417
              N I  N  N
Sbjct: 953  TVNQIQANGEN 963


>02_02_0578 +
           11745811-11746013,11749902-11750241,11750325-11750543,
           11751043-11751102,11751262-11751417,11751518-11751611,
           11751914-11751927
          Length = 361

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +1

Query: 352 EVNLPAYKRLAKFNTI---VLNKSNQTCMDYSYDHMIK 456
           EV+L   + +A  NT+   V+N SN     YSYDH+ K
Sbjct: 144 EVDLEGVQAIADENTVAIVVINPSNPCGSVYSYDHLAK 181


>04_01_0075 - 838358-838945,847120-847282,847581-847687
          Length = 285

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
 Frame = +1

Query: 331 VCKMMTEEVNLPAYKRLAKFNTIVLNKSNQT---CMDYSYDHMIKDLRNVSWGKDEARQW 501
           VC  +T       ++ +  ++ I  N +       M Y Y  +I+D  N  WG D    W
Sbjct: 74  VCTSITLATRKEMHEAMGPYDLISFNVATDDYGELMSYIYTLLIQDSSNKMWGPDNTVVW 133

Query: 502 M 504
           +
Sbjct: 134 V 134


>02_05_0106 - 25877997-25878677,25878951-25879222,25879317-25879476
          Length = 370

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = -2

Query: 103 HNLLLQFSLLMHLPQLES 50
           H+LL Q + L HLPQLES
Sbjct: 229 HHLLPQEAFLQHLPQLES 246


>01_01_0767 +
           5931031-5931281,5931414-5931594,5932020-5932129,
           5932212-5932360,5932686-5932738,5933168-5933260
          Length = 278

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/79 (20%), Positives = 34/79 (43%)
 Frame = +1

Query: 115 KLAHSXITDLMTKSPDIIEKEFKVCKSFGLASRSDMINFYSSIADDFADLVQYNEDNRIS 294
           +LA +   + + + P + E+ +K         R ++  + S +ADD  D+ +  +     
Sbjct: 184 QLAKNAFDEAVAELPSLSEENYKDSTLIMQLLRDNLALWNSDMADDADDIRERTDTTGAK 243

Query: 295 ADQRYKNLTINTVCKMMTE 351
            D     + I+T C +  E
Sbjct: 244 GDPAACQVRIDTCCHLTYE 262


>07_01_0706 - 5325073-5326038
          Length = 321

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 366 W*IYFLSHHFADRIYGKVFISLVCTYSIV 280
           W    L  H ADR YG+    L+C  ++V
Sbjct: 292 WLAMKLREHLADRRYGRTLALLICPATLV 320


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,681,181
Number of Sequences: 37544
Number of extensions: 229423
Number of successful extensions: 608
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)