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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_I22
         (376 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    36   0.002
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    34   0.008
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    30   0.10 
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    27   0.73 
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    27   0.73 
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    27   0.96 
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   1.7  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   2.9  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   2.9  
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    25   3.9  
SPBC342.04 |||adhesion regulating molecule protein homolog|Schiz...    25   3.9  
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    25   3.9  
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    25   3.9  
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr...    25   5.1  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    24   6.8  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    24   6.8  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    24   6.8  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    24   9.0  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    24   9.0  
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    24   9.0  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 35.9 bits (79), Expect = 0.002
 Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
 Frame = -2

Query: 372 SSLTRPECLITASESCLTGS-VTLITGSESSLTGPVTLITASESSXTRPETLITACESSL 196
           SSL+      TAS S  + S ++  + S SS T   + I++S SS + P T  ++  SS 
Sbjct: 252 SSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSP-TSTSSTISSS 310

Query: 195 TRSETLITGDMVTVSWSKTLAVSSKSTLAWSTVARTS 85
           + S +  +  + + S S + + SS  T + ST++ +S
Sbjct: 311 SSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSS 347



 Score = 33.9 bits (74), Expect = 0.008
 Identities = 28/96 (29%), Positives = 52/96 (54%)
 Frame = -2

Query: 372 SSLTRPECLITASESCLTGSVTLITGSESSLTGPVTLITASESSXTRPETLITACESSLT 193
           SS+       +++ S L+ S +  T S SS +   ++I++S SS + P T  ++  SS +
Sbjct: 238 SSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSS--SIISSSSSSSSSP-TSTSSTISSSS 294

Query: 192 RSETLITGDMVTVSWSKTLAVSSKSTLAWSTVARTS 85
            S +  T    T+S S + + S  STL+ S+++ +S
Sbjct: 295 SSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSS 330



 Score = 26.2 bits (55), Expect = 1.7
 Identities = 22/84 (26%), Positives = 43/84 (51%)
 Frame = -2

Query: 336 SESCLTGSVTLITGSESSLTGPVTLITASESSXTRPETLITACESSLTRSETLITGDMVT 157
           S S +  + +  + + SSL+   +  TAS SS +   + I +  SS + S T  +  + +
Sbjct: 236 STSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSS---SSIISSSSSSSSSPTSTSSTISS 292

Query: 156 VSWSKTLAVSSKSTLAWSTVARTS 85
            S S +   S+ ST++ S+ + +S
Sbjct: 293 SSSSSSSPTSTSSTISSSSSSSSS 316


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 33.9 bits (74), Expect = 0.008
 Identities = 35/99 (35%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
 Frame = -2

Query: 372 SSLTRPECLITASESCLTGSVTLITGSESSLTGPVT-LITASESSXTRPETLITACESSL 196
           S+ T    L T S SC T +    TG  SSL+ P+T  +  + +S T      T+  S+ 
Sbjct: 157 STDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTD 216

Query: 195 TRSETL-ITGDMVTVSWS-KTLAVSSKSTLAWSTVARTS 85
           T S  L  T    T S S  T   SS ST    TV  TS
Sbjct: 217 TNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTS 255



 Score = 32.3 bits (70), Expect = 0.026
 Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
 Frame = -2

Query: 372 SSLTRPECLITASESCLTGSVTLITGSESSLTGPVT-LITASESSXTRPETLITACESSL 196
           S+ T    L T S SC T S ++ TG  SSL+ P+T  +  + +S T      T+  S+ 
Sbjct: 214 STDTNSSPLPTTSTSCTT-STSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTD 272

Query: 195 TRSETLITGDMVTVSWSKTLAVSSKSTLAWSTVARTS 85
           T S  L T      + +      + +T    TV  TS
Sbjct: 273 TNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTS 309



 Score = 30.7 bits (66), Expect = 0.078
 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
 Frame = -2

Query: 348 LITASESCLTGSVTLITGSESSLTGPVT----LITASESSXTRPETLITACESSLTRSET 181
           L + S SC T +    TG  SSL+ P+T      + S +S   P T  ++ +++     T
Sbjct: 108 LPSTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167

Query: 180 LITGDMVTVSWSKTLAVSSKSTLAWSTVARTS 85
             T    + S   T   SS ST    TV  TS
Sbjct: 168 TSTSCTTSTSIPPTGGSSSLSTPITPTVPPTS 199



 Score = 27.9 bits (59), Expect = 0.55
 Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
 Frame = -2

Query: 372 SSLTRPECLITASESCLTGSVTLITGSESSLTGPVTLITASESSXTRPETLITACESSLT 193
           S+ T    L++ S SC T +    TG+    T PVT      SS T   T      +S+ 
Sbjct: 378 STGTSSSPLLSTSTSCTTSTSIPPTGNS---TTPVTPTVPPTSSSTPLTTTNCTTSTSVP 434

Query: 192 RSETLITG-DMVTVSWSKTLAVSSKSTLAWSTVARTS 85
            + T +T   + T + + + +V   ST   ST   T+
Sbjct: 435 YTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTT 471



 Score = 25.8 bits (54), Expect = 2.2
 Identities = 22/86 (25%), Positives = 37/86 (43%)
 Frame = -2

Query: 372 SSLTRPECLITASESCLTGSVTLITGSESSLTGPVTLITASESSXTRPETLITACESSLT 193
           S+ T    L T S SC T +    TG+ ++   P    T++ S+ T P     A  SS  
Sbjct: 270 STDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPP---PASTSSTG 326

Query: 192 RSETLITGDMVTVSWSKTLAVSSKST 115
            S + +     + + S ++  +  ST
Sbjct: 327 TSSSPLPSTSTSCTTSTSIPPTGNST 352



 Score = 25.8 bits (54), Expect = 2.2
 Identities = 21/76 (27%), Positives = 33/76 (43%)
 Frame = -2

Query: 372 SSLTRPECLITASESCLTGSVTLITGSESSLTGPVTLITASESSXTRPETLITACESSLT 193
           S+ T    L + S SC T +    TG+ ++   P    T++ S+ T P    T+  +  +
Sbjct: 324 STGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTS-STGTS 382

Query: 192 RSETLITGDMVTVSWS 145
            S  L T    T S S
Sbjct: 383 SSPLLSTSTSCTTSTS 398


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 30.3 bits (65), Expect = 0.10
 Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
 Frame = -2

Query: 342 TASESCLTGSVTLITG--SESSLTGPVTLITASESSXTRPETLITACESSLTRSETLITG 169
           +AS S LT S    +   S SSL    T  T S S  +   T  +A  SSL  S T  + 
Sbjct: 69  SASSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSS 128

Query: 168 DMVTVSWSKTLAVSS--KSTLAWSTVARTSV 82
              +   S +LA SS   S+LA S+   +S+
Sbjct: 129 LASSSITSSSLASSSITSSSLASSSTTSSSL 159



 Score = 27.9 bits (59), Expect = 0.55
 Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
 Frame = -2

Query: 372 SSLTRPECLITASESCLTGSVTLITGSESSL-TGPVTLITASESSXTRPETLITACESSL 196
           SSL       T S S  + S+T  + + SSL +   T  + + SS T      ++  SS 
Sbjct: 89  SSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSS 148

Query: 195 TRSETLITGDMVTVSWSKTLAVSSKSTLAWSTVARTS 85
             S +  +  + + S + T + +  S+   S+++ T+
Sbjct: 149 LASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTA 185



 Score = 27.9 bits (59), Expect = 0.55
 Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
 Frame = -2

Query: 336 SESCLTGSVTLITGSESSLTGPVTLITASESSXTRPETLITACESSLTRSETLITGDMVT 157
           S +  + S T  + + SSL    T  TA+ SS +      +A  SSL  S    T     
Sbjct: 182 SSTAASNSATSSSLASSSLNS-TTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATA 240

Query: 156 VSWSKTLAVSSKS--TLAWSTVARTSVMR*AVTYEY 55
            S S +  VSS +  T + ST A TS    + + +Y
Sbjct: 241 TSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQY 276


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 27.5 bits (58), Expect = 0.73
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = -2

Query: 321 TGSVTL--ITGSESSLTGPVTLITASESSXTRPETLITACESSLTRSETLITGDMVT 157
           TGS TL  I     S TGP T+   + S      T       SLT + T  +G +VT
Sbjct: 719 TGSTTLTSIVTHSGSETGPTTVYIETPSVSATTTTTTIGYSGSLTTTLTGSSGPVVT 775


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 27.5 bits (58), Expect = 0.73
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -2

Query: 333 ESCLTGSVTLITGSESSLTGPVTLITASESSXTRPETLITACES--SLTRSETL 178
           ++C+    TLIT  ES +     L++  E S    E++I+  E+  S T + TL
Sbjct: 209 QACIESRSTLITSLESLIEEQKKLLSEEEESLKSVESIISNLENKESTTATSTL 262


>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 27.1 bits (57), Expect = 0.96
 Identities = 18/86 (20%), Positives = 42/86 (48%)
 Frame = +2

Query: 113 RVDLEETAKVLDQDTVTMSPVIKVSDRVKEDSQAVIKVSGLVXEDSEAVIKVTGPVREDS 292
           + D  +   V+++DT++   ++K    +  +S  ++ V G+V +  E +   T    E  
Sbjct: 131 KYDTIQALAVVNKDTISKQ-MVKWCGSISLES--IVLVEGIVKKSPEIIKSATVQDAEIH 187

Query: 293 EPVIKVTDPVRQDSEAVIRHSGRVKE 370
              I V  P++++   ++  +GR +E
Sbjct: 188 ISSIYVISPIKKNLPFLVEDAGRSEE 213


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
 Frame = -2

Query: 321 TGSVTLITGSESSLTGPV-TLITASESSXTRPETLI-TACESSLTRSETLITGDMVTVSW 148
           + S + +  + S+LT  V T +TA+  S     TLI +   SS T +    +  +VT+  
Sbjct: 273 SSSSSYLVETSSTLTDSVFTTVTATSDSSVITYTLINSVTSSSETTNLPSSSSSLVTIGE 332

Query: 147 SK-TLAVSSKSTLAWSTVARTS 85
           S    ++ S  T ++STV  TS
Sbjct: 333 SSFPSSLLSLLTQSFSTVRSTS 354


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = -2

Query: 294 SESSLTGPVTLITASESSXTRPETLITACESSLT--RSETLITGDMVTVSWSKTLAVSSK 121
           S +SL+    L T+  +S + P T+ ++  SS T   S  L T    T + S T  VSS 
Sbjct: 235 SSASLSSSSVLPTSIITSTSTPVTVSSSSLSSFTPSYSTNLTTTGSTTTTGSAT--VSSS 292

Query: 120 STLAWSTVARTSV 82
              + S+V  TSV
Sbjct: 293 PFYSNSSVIPTSV 305


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
 Frame = -2

Query: 372 SSLTRPECLITASESCLTGSVTLITGSESSLT-GPVTLITASESSXTRPETLITACESSL 196
           S+ T     I++S S  +  ++  T S SSL     ++I+ S S  +   + I    S  
Sbjct: 605 SASTSSPSSISSSISSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSISTIPISSSLS 664

Query: 195 TRSETLITGDMVTVSWSKTLAVSSKSTLAWST 100
           T S ++I      VS S +L VSS    + S+
Sbjct: 665 TYSSSVIPSSSTLVSSSSSLIVSSSPVASSSS 696


>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
 Frame = +2

Query: 68  TAYLITEVLATVDQARVDLEETAKVLDQDTVTMSPVIKVSDRVK-EDS--QAVIKVSG-L 235
           TAY+++E L T+D       ET  + D+ +V    V  +  R++  DS  Q+ IK  G L
Sbjct: 5   TAYILSEYLQTLDNVP---NETKHIFDEISVKEVAVHDIWKRIQAADSQIQSYIKSHGSL 61

Query: 236 VXEDSEAVIKVTGPVREDSEPVIKV 310
                E  +  T  +RE+ +  I +
Sbjct: 62  TPHPKEDALYST--IREEYQKAINI 84


>SPBC342.04 |||adhesion regulating molecule protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 291

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 101 VDQARVDLEETAKVLDQDTVTMS-PVIKVSDRVKEDSQ 211
           +D AR D+   + +++ DTV  S P+ + ++  KE S+
Sbjct: 117 LDPARSDVATVSDMMEVDTVEQSEPIAQPTESSKESSE 154


>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 9/28 (32%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -1

Query: 142 NLGC-FLQIHPGLVHRSQNLRNEVSRYI 62
           N+G  FL  H G+ H + ++RN+ ++++
Sbjct: 137 NIGMIFLYTHSGMTHITPSIRNDSTKFL 164


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 294 SESSLTGPVTLITASESSXTRPETLITACESSLTRSET 181
           SE+ L GP T    + +S +RP   I + +S   RS T
Sbjct: 5   SENHLLGPKTSFIDNRTSTSRPLHEIPSYQSLARRSST 42


>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 323

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 113 RVDLEETAKVLDQDTVTMSPVIKVSDR 193
           R+DL    K+LD++   + P   VSDR
Sbjct: 215 RLDLNTRDKILDKNNRPLQPFTIVSDR 241


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 234 RPETLITACESSLTRSETLITGDMVTVSWSKTL 136
           RPE+ ++   +S  R +   T  + TVS SK L
Sbjct: 60  RPESSVSVVSNSPHRQDAATTNTVSTVSVSKVL 92


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 358 ARMPDYRLRILPDRVRNLDYRLRILPDRARNLD 260
           A + D  +R L +   N DYR+R+L    + +D
Sbjct: 425 ASLTDAEIRSLSNASSNQDYRVRVLSRNFKCID 457


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
 Frame = -2

Query: 336 SESCLTGSVTLITGSESSLTGPVTLITASESSXTRPETLITACESSLTRSETLITGDMVT 157
           S S L  S  + + +  + + P+T  +   SS     + +    + +TR   L +   +T
Sbjct: 542 SSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITRYSVLNSSTPIT 601

Query: 156 VS--WSKTLAVSSKSTLAWSTVARTS 85
            S   + +  ++S S L  ST   +S
Sbjct: 602 SSTVLNSSTPITSSSVLNSSTPITSS 627


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 53  LYSYVTAYLITEVLATVDQ 109
           +YS    YL+ +VL++VDQ
Sbjct: 718 IYSQADIYLLDDVLSSVDQ 736


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -1

Query: 319 RVRNLDYRLRILPDRARNLDYCLRILXDQARNLDYSLRILLDPVRNLD 176
           R+ +++    IL  R   L  CL+       ++   LR  ++PVRN D
Sbjct: 132 RLYSVELFSAILSCRPTELKDCLQTFPSAISSIMVPLRDSIEPVRNAD 179


>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +2

Query: 50  HLYSYVTAYL-ITEVLATVDQ--ARVDLEETAKVLDQDTVTMS 169
           H+  YV A + + E ++ ++   A++DL   +   DQD VT S
Sbjct: 404 HVSQYVKAIVELREQISELENRLAQIDLSSQSNGSDQDAVTQS 446


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,052,091
Number of Sequences: 5004
Number of extensions: 17458
Number of successful extensions: 108
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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