Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_I19
         (471 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    26   2.5  
SPCC191.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   3.3  
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    26   3.3  

>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 42  IVNNNLSGKDLEEFNRIYYGR 104
           ++ N L  K+LE+ NRI YG+
Sbjct: 747 VLQNTLVAKNLEQANRIAYGK 767


>SPCC191.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 149

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 63  GKDLEEFNRIYYG-RKDHFEIKLKDTS 140
           GKD  E  RIY   RK+ F+I LK  S
Sbjct: 116 GKDFTEMTRIYLSIRKNFFQICLKTHS 142


>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 276 INEQKKAIFDKVKKIIDVAGQEGVNIICFQELWNM 380
           ++  K   +D+VK I  +  +   NI C  E WNM
Sbjct: 292 LDSSKHPRWDRVKNIDPIKFEFADNIKCALEAWNM 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,017,188
Number of Sequences: 5004
Number of extensions: 40270
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)