Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_I19
(471 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 121 3e-28
02_02_0300 - 8746526-8747224,8749033-8749089,8749414-8749650,875... 30 0.82
08_02_0270 + 15108178-15108587,15108678-15108774,15109445-151094... 29 2.5
07_03_0280 + 16219427-16220236,16220660-16220908 28 3.3
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711... 28 4.4
06_03_0293 + 19212963-19212965,19213900-19214235,19214658-192148... 27 5.8
06_03_0291 + 19198302-19198333,19199218-19199734,19200171-192003... 27 5.8
12_02_0281 + 16744690-16744727,16744744-16745611,16746195-167467... 27 7.6
05_05_0184 + 23059430-23060062,23060654-23060803,23061033-23061110 27 7.6
02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,198... 27 7.6
01_07_0069 + 40869496-40869535,40869627-40869663,40870241-408703... 27 7.6
01_06_0819 - 32224383-32225831 27 7.6
01_01_1190 + 9463973-9465732,9466210-9466440,9467664-9467793,946... 27 7.6
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 121 bits (292), Expect = 3e-28
Identities = 67/156 (42%), Positives = 93/156 (59%), Gaps = 8/156 (5%)
Frame = +3
Query: 27 QSLEAIVNNNLSGKDLEEFNRIYYGR---KDHFEIKLKDTSXXXXXXXXXXXXXXXFPAK 197
+SL ++ +NLS + +E +R+ G + I L + + F A
Sbjct: 27 ESLHRLLQSNLSPELFKEASRLLLGLNCGRALEAISLPEATSALAKAHNFDVQAFRFDAD 86
Query: 198 KEQTRPPRIVKVGIIQHSIAIPTDRPINEQKKAIFDKVKKIIDVAGQEGVNIICFQ---- 365
KE R PR+++VG+IQ+SIAIPT +QKKAI +KVK +ID AG GVNI+C Q
Sbjct: 87 KEYLRQPRVIRVGLIQNSIAIPTTSHFADQKKAIMEKVKPMIDAAGDAGVNILCLQVSQL 146
Query: 366 -ELWNMPFAFCTREKQPWCEFAESAEEGPTTRFLRE 470
E W MPFAFCTREK+ WCEFAE +G +T+FL++
Sbjct: 147 SEAWTMPFAFCTREKR-WCEFAEPV-DGESTQFLQQ 180
>02_02_0300 -
8746526-8747224,8749033-8749089,8749414-8749650,
8750061-8750172,8750258-8750538,8752032-8752244,
8753105-8753636,8753871-8753899
Length = 719
Score = 30.3 bits (65), Expect = 0.82
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +2
Query: 17 PRNPKP*SDRQQQLKWQRPRGVQQDLLWTERP--FRNQIKRYI 139
P N K R +Q +WQ RGV ++ L + P R +IKR++
Sbjct: 419 PDNLKERILRHEQYRWQETRGVDEEGLLSNLPKNLRREIKRHL 461
>08_02_0270 + 15108178-15108587,15108678-15108774,15109445-15109492,
15109583-15109806,15111367-15111463,15111556-15111651,
15112297-15112544,15112632-15112715,15112787-15113236,
15114880-15115024,15115116-15115217,15115677-15115769,
15117308-15117349,15119085-15119113,15119210-15119251,
15119922-15119997,15120764-15120835,15121208-15121326,
15121428-15121491,15121576-15123009
Length = 1323
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 3 RANM-DHETQSLEAIVNNNLSGKDLEEFNRIYYG 101
R N+ D+ S E+ N + G+D++E+ R YYG
Sbjct: 1138 RQNLEDYTMDSSESAQMNPVPGRDVQEYARTYYG 1171
>07_03_0280 + 16219427-16220236,16220660-16220908
Length = 352
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 267 DRPINEQKKAIFDKVKKIIDVAGQEG 344
D IN + +FDK+ ++DVAG G
Sbjct: 190 DMAINGSGRQVFDKITSMVDVAGGTG 215
>02_04_0096 +
19669428-19669525,19670770-19670818,19671041-19671132,
19671235-19671386,19671478-19671524,19671617-19671650,
19671769-19671935,19672070-19672166,19672239-19672408
Length = 301
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +3
Query: 303 DKVKKIIDVAGQEGVNIICFQELWNMPFAFCTREKQPWCEFAESAEEGPT 452
D +++I A ++G NI+ QEL+ + FC ++ + + A+ + PT
Sbjct: 29 DTAERLIREAHKKGANIVLVQELFEGQY-FCQAQRLDFFQRAKPYKGNPT 77
>06_03_0293 +
19212963-19212965,19213900-19214235,19214658-19214870,
19216134-19216408,19216504-19216615,19217181-19217417,
19217445-19217462
Length = 397
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 17 PRNPKP*SDRQQQLKWQRPRGVQQDLLWTERP--FRNQIKRYI 139
P N K R ++ +W + GV ++LL P R IKR++
Sbjct: 343 PENLKERIRRHEKYRWHQTSGVDEELLLMNLPKDLRRAIKRHL 385
>06_03_0291 +
19198302-19198333,19199218-19199734,19200171-19200383,
19201067-19201111,19201671-19201945,19202041-19202152,
19202453-19202539,19202727-19202963,19204127-19204825
Length = 738
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 17 PRNPKP*SDRQQQLKWQRPRGVQQDLLWTERP--FRNQIKRYI 139
P N K R ++ +W + GV ++LL P R IKR++
Sbjct: 457 PENLKERIRRHEKYRWHQTSGVDEELLLMNLPKDLRRAIKRHL 499
>12_02_0281 +
16744690-16744727,16744744-16745611,16746195-16746725,
16747737-16748549
Length = 749
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +2
Query: 44 RQQQLKWQRPRGVQQDLLWTERP--FRNQIKRYINCRCQR 157
R Q +W RGV +D L P R +KR++ R R
Sbjct: 484 RHDQYRWLETRGVDEDSLVRSLPKDLRRDVKRHLCLRLVR 523
>05_05_0184 + 23059430-23060062,23060654-23060803,23061033-23061110
Length = 286
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 310 TLSKIAFFCSLIGRSVGIAI 251
TL IA FC L+G S G AI
Sbjct: 40 TLKVIAIFCILVGSSAGCAI 59
>02_01_0297 +
1986422-1986570,1986960-1987065,1987188-1987464,
1987805-1988305,1989010-1990016,1990131-1990781,
1991337-1991633,1991735-1992013,1993070-1993198,
1993291-1993491,1993651-1993793,1993878-1994190,
1994349-1994488,1995320-1995398,1995484-1995753,
1996208-1996425,1996521-1996632
Length = 1623
Score = 27.1 bits (57), Expect = 7.6
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -1
Query: 192 PGKRTRQSQNQLLWQRQLMYLLI*FRNGLSVHNKSC*TPRGLCHLSCC 49
P Q+ + + RQ+ +LL+ F H KSC TP G C C
Sbjct: 637 PSGGLEQAAGNIYYFRQMKWLLLLF------HAKSCLTPVGSCKFHRC 678
>01_07_0069 +
40869496-40869535,40869627-40869663,40870241-40870387,
40872360-40872405,40872580-40872846,40873151-40873540
Length = 308
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 186 FPAKKEQTRPPRIVKVGIIQHSIAIPTDRPINEQKKAIF 302
F K+ PPRI V HS A P D E+K+ +
Sbjct: 87 FDTKEMAIAPPRIQPVSAHLHSSASPKDSDHQEKKQVCY 125
>01_06_0819 - 32224383-32225831
Length = 482
Score = 27.1 bits (57), Expect = 7.6
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +2
Query: 41 DRQQQLKWQRPRGVQQDLLWTERPFRNQIKRYINCRC 151
+ Q L W + +G+++D W+ R ++ K+Y C
Sbjct: 440 EAQGILHWMKKKGLRKDAGWSLRMLEDKSKKYTTDGC 476
>01_01_1190 + 9463973-9465732,9466210-9466440,9467664-9467793,
9468723-9468888,9469528-9469859,9470284-9470513,
9471535-9471613,9471689-9471865
Length = 1034
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 329 DIDYLFYLIENCFFLLVNWTVGWY 258
D DYLF LI + +L + T WY
Sbjct: 1002 DADYLFKLIGKAYAILSDPTTNWY 1025
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,054,026
Number of Sequences: 37544
Number of extensions: 255288
Number of successful extensions: 596
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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