Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_I18
(192 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 24 2.4
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 23 4.2
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 23 5.6
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 23 5.6
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 23 5.6
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 23 5.6
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 23 7.4
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces... 23 7.4
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 22 9.8
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 22 9.8
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 22 9.8
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 24.2 bits (50), Expect = 2.4
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 61 PGAERPTGRGPLQGEQPNG 117
PG RP GRG G+ P G
Sbjct: 98 PGVARPAGRGIPLGQAPVG 116
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 23.4 bits (48), Expect = 4.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 98 KENNPTVLECLIEGNDQGVKYSWQK 172
K+NNP +L +G +G KY+ ++
Sbjct: 403 KDNNPILLSLSSDGTVRGWKYTGEQ 427
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 23.0 bits (47), Expect = 5.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -1
Query: 180 FPSFCQEYLTP*SFPSMRHSRTVGLFSLKRTSAGWSFST 64
+ FC YLT F S+ +R+ L+ L + + + ST
Sbjct: 1073 YKGFCYLYLTLKVFLSISSNRSALLYQLLKLANSYETST 1111
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 23.0 bits (47), Expect = 5.6
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 74 DQPAEVLFKENNPTVLECLIEGND 145
DQPA LF+ N LE I ++
Sbjct: 534 DQPANTLFRHNLTASLESAIRSSN 557
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 23.0 bits (47), Expect = 5.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 83 AEVLFKENNPTVLECLIEGNDQ 148
AEV +E P+V+EC I D+
Sbjct: 1311 AEVTLEEGIPSVVECEIINTDR 1332
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 23.0 bits (47), Expect = 5.6
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 186 KDFPSFCQEYLTP*SFP 136
KD PS+ QEYL +P
Sbjct: 553 KDIPSYSQEYLGKSHYP 569
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 22.6 bits (46), Expect = 7.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 87 SAGWSFSTGYLSTGSAEPTI 28
S WS + YL+ GSA+ TI
Sbjct: 310 SLKWSGTDTYLAAGSADGTI 329
>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 22.6 bits (46), Expect = 7.4
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -3
Query: 178 PILLPGVLDSLIVSFDETFEDRWVVLLEED-LGRLVFQHR 62
P G SLI SF + W+VLL LG + F H+
Sbjct: 442 PYFSLGSFISLIFSFTKVVNSLWLVLLVVPLLGFVGFWHQ 481
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 22.2 bits (45), Expect = 9.8
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -1
Query: 150 P*SFPSMRHSRTVGLFSLKRTSAGWSFSTGYLSTGSAEP 34
P S PS+ SR LFS S SF + + S+ P
Sbjct: 218 PESKPSVYKSRASNLFSSNEQSIHSSFGSKFHFDKSSNP 256
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 22.2 bits (45), Expect = 9.8
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -1
Query: 78 WSFSTGYLS 52
WSF TGYLS
Sbjct: 148 WSFITGYLS 156
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 22.2 bits (45), Expect = 9.8
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -1
Query: 81 GWSFSTGYLSTGSAEP 34
G SFS GY+S S P
Sbjct: 59 GLSFSPGYISPSSQSP 74
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 840,518
Number of Sequences: 5004
Number of extensions: 14104
Number of successful extensions: 43
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 42946120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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