Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_I17
         (269 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy...    31   0.037
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar...    29   0.11 
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    26   0.80 
SPAC2C4.09 |||DUF1640 family protein|Schizosaccharomyces pombe|c...    25   1.9  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    25   2.5  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    24   4.3  
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ...    23   7.5  
SPAC6F6.18c |mug169||sequence orphan|Schizosaccharomyces pombe|c...    23   9.9  

>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 180

 Score = 30.7 bits (66), Expect = 0.037
 Identities = 17/25 (68%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +3

Query: 186 DAAGKTTILYNSN**N-VTTIPTMG 257
           DAAGKTTILY       VTTIPT+G
Sbjct: 26  DAAGKTTILYKLKLGEIVTTIPTIG 50


>SPBC1539.08 |||ADP-ribosylation factor, Arf
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 29.1 bits (62), Expect = 0.11
 Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +3

Query: 186 DAAGKTTILYNSN-**NVTTIPTMG 257
           DAAGKTTILY      +V TIPT+G
Sbjct: 30  DAAGKTTILYKLKLNQSVVTIPTVG 54


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 26.2 bits (55), Expect = 0.80
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -1

Query: 125  NIFPILCFANSIFQKQRFXRIQEKATLREF 36
            NIF  LC  +S+F+  R+ RI+++  ++ +
Sbjct: 1195 NIFMELCQGSSLFEFLRYGRIEDELVIQVY 1224


>SPAC2C4.09 |||DUF1640 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 216

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -2

Query: 121 YSPFYALRIVF-FRSKGXLEFKKKLHSENSIKFV 23
           + P +  R V   RS G   F +K H  NS++FV
Sbjct: 14  FQPLFRARTVHKVRSLGLNGFYRKYHGFNSLRFV 47


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 203 YNSIQLKLVKCYNNSHYGSMW 265
           +NS+  K    +NN H GS W
Sbjct: 364 FNSLNSKNKLAFNNMHSGSWW 384


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 30  FIEFSECSFFLNSXKPLLLKNTIR 101
           FI  S CSFF+   +P+ L  TIR
Sbjct: 530 FIAHSTCSFFVEIAQPITL--TIR 551


>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 180

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 214 TTQISEMLQQFPLWVNV 264
           T  IS ++QQ P W+ V
Sbjct: 109 TATISGLIQQVPTWIKV 125


>SPAC6F6.18c |mug169||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +2

Query: 95  YSQSIKWGICCNYLKAL 145
           +++SIK GI CN+ +++
Sbjct: 91  FNRSIKEGIICNFTRSI 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,063,155
Number of Sequences: 5004
Number of extensions: 17052
Number of successful extensions: 29
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)