Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_I15
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    30   0.24 
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    27   2.2  
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    26   2.9  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    26   3.8  
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    25   5.1  
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    25   8.9  

>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = -1

Query: 417 VYYCKNFFRFCTVSHIF-SCSLSNFNMECSFNENRIAMIALHKMCMGRQTYSRHFKSFVL 241
           +YY  + +    +  +F SC L   +     NE+ I  I L  + + + TYS+   S+V+
Sbjct: 797 LYYGSDDYIHSPILQVFASCWLKQNSNYGFLNEDIIVKIVLILIDLHKSTYSKKLNSYVV 856

Query: 240 PVCSYI 223
           P+ +++
Sbjct: 857 PMETFV 862


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = -3

Query: 148 TTEAVNA--VKARIRRNPIRKQKILSREMNI 62
           TTE+ +A  ++AR RRN +RK   LSR+  +
Sbjct: 473 TTESASAYFLEARRRRNAVRKDPKLSRQPQV 503


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 422 NTYIIVKTSFDFAPFHIFFRVHYQISIWNVVL 327
           NT  + K  FD+ P +I   VHY IS  +  L
Sbjct: 274 NTSSLEKPKFDYLPPNILQSVHYLISTISATL 305


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 310 NDRLAQNVYGSSDIF*TLQKLCITRMFVYRT 218
           N     ++YG+ D+F TL  + + R F + T
Sbjct: 162 NSSFISHIYGNYDVFSTLYTVILKRKFGFET 192


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/41 (31%), Positives = 15/41 (36%)
 Frame = -2

Query: 302 PCTKCVWVVRHILDTSKALYYPYVRISYYQQIQQHFVCPRL 180
           P  K +W  RH L   K    P     +Y       VCP L
Sbjct: 236 PAAKMMWYRRHYLPNEKDWSNPEASPFFYPDSSFKNVCPAL 276


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 278 RPIHILCKAIIAILFSL 328
           RP+H+LC   I IL SL
Sbjct: 275 RPLHLLCTQPIMILISL 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,126,056
Number of Sequences: 5004
Number of extensions: 42674
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)