Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_I13
         (554 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0613 + 26617677-26617963,26618726-26618786,26619598-266198...    30   1.1  
05_05_0316 + 24035163-24035228,24035524-24035583,24035710-240357...    28   4.4  

>04_04_0613 +
           26617677-26617963,26618726-26618786,26619598-26619832,
           26619958-26620196,26620493-26620744,26620844-26621024,
           26621810-26621898,26622200-26622273,26622365-26622443
          Length = 498

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +2

Query: 188 LDLTSQSLISPKGSSIWTMEELDEAIKDPSTNPNYLPAITESYRYLKSTHE 340
           LDLT + +   K  S+  M+E D+ +     +P + P+I E  RYL S  +
Sbjct: 254 LDLTKKGVCVLKNCSMLVMDEADKLL-----SPEFQPSIQELIRYLPSNRQ 299


>05_05_0316 +
           24035163-24035228,24035524-24035583,24035710-24035787,
           24035862-24035913,24036124-24036395,24036508-24036750,
           24036849-24036995
          Length = 305

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 22/79 (27%), Positives = 34/79 (43%)
 Frame = +2

Query: 269 DPSTNPNYLPAITESYRYLKSTHEHGNKPENSIKVYVRAMDISTWTLAELNEAIANPATN 448
           D ST+P+    I  + R L    E   K     K YV+ ++ S   L +L + +   A  
Sbjct: 9   DASTDPDIDKNIRMTLRRLAQNREAARKSRLRKKAYVQQLEDSRMKLTQLEQELQR-ARQ 67

Query: 449 PELIHYLETARTRLTSESE 505
             +I      + R TSE+E
Sbjct: 68  QGIIISTSGDQQRSTSENE 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,653,073
Number of Sequences: 37544
Number of extensions: 230744
Number of successful extensions: 548
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)