Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_I12
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...   120   2e-28
SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...   117   1e-27
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   6.3  
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    25   6.3  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    25   8.3  

>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score =  120 bits (289), Expect = 2e-28
 Identities = 55/92 (59%), Positives = 64/92 (69%)
 Frame = +1

Query: 7   MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 186
           MTKGT SFG R NK+HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W  KA       
Sbjct: 1   MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60

Query: 187 XXXMRHLKIVRRRFRNGFKEGKLTPKKAVASS 282
              M +LK V R F+NGF+ GK  P  AVA+S
Sbjct: 61  TGRMSYLKKVHRSFKNGFRSGK--PAAAVAAS 90


>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score =  117 bits (281), Expect = 1e-27
 Identities = 51/84 (60%), Positives = 59/84 (70%)
 Frame = +1

Query: 7   MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 186
           MTKGT SFG R NK+HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W  KA       
Sbjct: 1   MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60

Query: 187 XXXMRHLKIVRRRFRNGFKEGKLT 258
              M +LK V R F+NGF+ GK T
Sbjct: 61  TGRMSYLKKVHRSFKNGFRAGKPT 84


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 411  KKLLQFFIETHNCHL-SLLRILTVSFMLTS 497
            + +L +FI  HN +L SL +I T+ FM+ +
Sbjct: 3860 ESVLDYFINVHNSNLDSLSKISTLFFMVAN 3889


>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 447 CHLSLLRILTVSFMLTSLVN 506
           C L  LR+LT SF LTS  N
Sbjct: 135 CSLQRLRVLTQSFELTSKYN 154


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = +1

Query: 43  NKTHTLCRRCGRSSYHIQKSKCAQCGYP 126
           N  H  C  C    Y  + S C QC  P
Sbjct: 654 NCGHAFCSNCMEPFYEHKTSTCPQCETP 681


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,021,492
Number of Sequences: 5004
Number of extensions: 33460
Number of successful extensions: 80
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)