Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_I12
         (595 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0089 + 633642-633644,633728-633863,635356-635457,635565-63...   122   2e-28
08_01_0195 + 1612938-1613003,1613026-1613161,1614624-1614725,161...   120   9e-28
02_05_1204 + 34936696-34936698,34936809-34936944,34937794-349378...   118   3e-27
12_01_0560 - 4532398-4532724,4532975-4533235,4533670-4533855,453...    31   0.69 

>02_01_0089 +
           633642-633644,633728-633863,635356-635457,635565-635608
          Length = 94

 Score =  122 bits (294), Expect = 2e-28
 Identities = 53/93 (56%), Positives = 69/93 (74%), Gaps = 1/93 (1%)
 Frame = +1

Query: 7   MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 186
           M KGT SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA       
Sbjct: 1   MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTG 60

Query: 187 XXXMRHLKIVRRRFRNGFKEG-KLTPKKAVASS 282
              MR+++ V RRF++ F+EG + TP+K  A++
Sbjct: 61  TGRMRYMRHVPRRFKSNFREGTEATPRKRAAAA 93


>08_01_0195 +
           1612938-1613003,1613026-1613161,1614624-1614725,
           1614833-1614876
          Length = 115

 Score =  120 bits (289), Expect = 9e-28
 Identities = 52/89 (58%), Positives = 66/89 (74%), Gaps = 1/89 (1%)
 Frame = +1

Query: 13  KGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXX 192
           KGT SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA         
Sbjct: 24  KGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTG 83

Query: 193 XMRHLKIVRRRFRNGFKEG-KLTPKKAVA 276
            MR+++ V RRF++ F+EG + TP+K  A
Sbjct: 84  RMRYMRHVPRRFKSNFREGTEATPRKRAA 112


>02_05_1204 +
           34936696-34936698,34936809-34936944,34937794-34937895,
           34938153-34938199
          Length = 95

 Score =  118 bits (285), Expect = 3e-27
 Identities = 52/93 (55%), Positives = 68/93 (73%), Gaps = 1/93 (1%)
 Frame = +1

Query: 7   MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 186
           M KGT SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA       
Sbjct: 1   MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTG 60

Query: 187 XXXMRHLKIVRRRFRNGFKEG-KLTPKKAVASS 282
              MR+L+ V +RF++ F+EG +  P+K  A++
Sbjct: 61  TGRMRYLRHVPKRFKSNFREGTEAAPRKKGAAA 93


>12_01_0560 -
           4532398-4532724,4532975-4533235,4533670-4533855,
           4533922-4533936,4533941-4534246,4535032-4535135,
           4535669-4535801
          Length = 443

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 12/22 (54%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
 Frame = -1

Query: 136 IWLQDNHIAH-ISISECGKMIY 74
           IWLQDN++ + + IS+CGK I+
Sbjct: 310 IWLQDNNVPYNVLISDCGKKIF 331


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,452,583
Number of Sequences: 37544
Number of extensions: 201923
Number of successful extensions: 449
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)