Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_I10
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.5  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    27   2.6  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    26   4.6  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    26   4.6  
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.1  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 331 TETLKTVSPATIEPQASVFSSRQHSQKTRANTLAKSTMESANPKSTL 471
           T +  T+S ++  P +S FSS   S K+ ++  +  +  S+   STL
Sbjct: 337 TSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTL 383


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +3

Query: 402 LPEDEGEYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKHGQDVTIPCKVTGL 578
           LPE+E E T  ++ G+G P K   K T+      E   E    ++    +T+P  ++ L
Sbjct: 427 LPEEERE-TYTLEEGLGLPSKSIYKKTIKLVYTSEHAEEMFKALERMPCLTLPLVISRL 484


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +3

Query: 390 FKTTLPEDEGEYTCEVDNGVGKPQK--HSLKLTVVSAPKYEQ-KPEKVIVVKHGQDVTIP 560
           F+T LPED  ++       +G+PQK  H++ L+  +  + +Q  PE+   +  G  +  P
Sbjct: 101 FRTILPEDYKKFYPNAKTHMGRPQKIPHTVGLSKSTRKERKQFTPEEDERLLEGFFLHGP 160

Query: 561 C 563
           C
Sbjct: 161 C 161


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = +3

Query: 225 SKDMMAKAGDVTMIYCMYGSNPLAHPNYFKNGKDVNGNP 341
           S   + K   +T+      S   A   YF  G D NGNP
Sbjct: 181 SASTIVKGRTITLALISRRSKQRAGTRYFTRGLDENGNP 219


>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +3

Query: 360 HNRTSGKRLLFKTTLPEDE--GEYTCEVDNGVGKPQKHSLKLTVVSAP 497
           +N  SG  L   TT+P DE   ++T +VD    +    SL L + S+P
Sbjct: 305 NNNKSGDSLEMSTTIPSDEENEDFTSKVD--AMEIHSGSLPLNIDSSP 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,308,898
Number of Sequences: 5004
Number of extensions: 48522
Number of successful extensions: 162
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)