Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_I10
         (578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0017 - 15113479-15113580,15113950-15114117,15115011-151152...    29   3.5  
02_01_0281 - 1879519-1879605,1880761-1880851,1881343-1881849,188...    28   4.7  
08_01_0632 - 5479118-5479555,5479701-5479866,5480452-5480565,548...    28   6.2  
02_01_0397 - 2877242-2878479,2878557-2878861,2879862-2880549,288...    28   6.2  
05_01_0355 - 2774217-2774318,2774608-2774775,2774872-2775090,277...    27   8.2  
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892...    27   8.2  

>01_04_0017 -
           15113479-15113580,15113950-15114117,15115011-15115229,
           15115303-15115446,15115558-15115840,15115936-15115991,
           15116067-15116216,15116299-15116385,15116463-15116498,
           15116746-15116808,15116887-15116967,15117053-15117142,
           15117349-15117426,15117510-15117731,15117788-15117835,
           15117948-15118133,15120910-15121009,15121107-15121246
          Length = 750

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +3

Query: 156 EYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNP 290
           E+  KG+TK  +  +G+P PQ+ S+D M      T IY M    P
Sbjct: 16  EFMQKGITKLKNILEGKPEPQFSSEDYMML---YTTIYNMCTQKP 57


>02_01_0281 -
           1879519-1879605,1880761-1880851,1881343-1881849,
           1881939-1882009,1882102-1882181,1882287-1882464
          Length = 337

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = -1

Query: 464 LLGFADSIVDFASVFALVFWECCLEEKTLA*GSIVAGDTVFRVSVHVLTILEVVRMSQRV 285
           LLGF++  V   S F LVF    +E      G +     + R+   V  I+E   +S  +
Sbjct: 164 LLGFSEGNVQETSEFDLVFLHVAMENTNSKLGKLGMKTDLNRLDKLVGAIMEAAPISSAI 223

Query: 284 AS 279
           AS
Sbjct: 224 AS 225


>08_01_0632 -
           5479118-5479555,5479701-5479866,5480452-5480565,
           5480713-5480849
          Length = 284

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 425 VFALVFWEC-CLEEKTLA*GSIVAGDTVFRVSVHVLTILEV 306
           VF     +C CLE+  +  G  + G+T F +SV V  + E+
Sbjct: 106 VFTEFISKCPCLEDLVVEEGGFIGGETGFTLSVEVTEMTEI 146


>02_01_0397 -
           2877242-2878479,2878557-2878861,2879862-2880549,
           2881998-2882016
          Length = 749

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
 Frame = +3

Query: 240 AKAG-DVTMIYCMY-GSNPLAHPNYFKNGKDVNG-----NPEDRITRHNRTSGKR 383
           A AG +V ++   Y GS P   P Y +NGKD++G      P D I ++  +  +R
Sbjct: 583 APAGNEVVIVPPRYSGSIPPTAPRYMENGKDISGRSLKAKPGDNILQNGSSKPER 637


>05_01_0355 -
           2774217-2774318,2774608-2774775,2774872-2775090,
           2775176-2775319,2775485-2775767,2775874-2775929,
           2776012-2776161,2776254-2776340,2776414-2776449,
           2777100-2777162,2777247-2777327,2777407-2777496,
           2777690-2777767,2777855-2778058,2778139-2778186,
           2778262-2778447,2779879-2779978,2780121-2780260
          Length = 744

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 168 KGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNP 290
           KG+TK  +  +G+P PQ+ S+D M      T IY M    P
Sbjct: 20  KGITKLKNILEGKPEPQFSSEDYMML---YTTIYNMCTQKP 57


>01_07_0018 -
           40488702-40488833,40488928-40489020,40489125-40489253,
           40489379-40489500,40490292-40490544,40490636-40490638
          Length = 243

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +3

Query: 348 RITRHNRTSGKRLLFKTTLPEDEGEYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVI 527
           RI R  R   +RL     +P    ++T  +D  +G  ++  LK     A     + +K I
Sbjct: 56  RIQRQRRVLKQRL----KVPPALNQFTRTLDKNLGCQKERLLKRAQAEAEGKTVEAKKPI 111

Query: 528 VVKHGQD 548
           VVK+G D
Sbjct: 112 VVKYGLD 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,420,900
Number of Sequences: 37544
Number of extensions: 325731
Number of successful extensions: 863
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)