Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_I09
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.14c ||SPAC23A6.14c|DUF1748 family protein|Schizosacchar...    28   1.0  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    27   3.1  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    26   5.3  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.1  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    25   7.1  
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3...    25   7.1  
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    25   9.3  
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    25   9.3  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   9.3  
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    25   9.3  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    25   9.3  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    25   9.3  

>SPAC26A3.14c ||SPAC23A6.14c|DUF1748 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 73

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = -1

Query: 450 FGVHVEIFVNCLGSVERHTPMTLEEYNIEKCD--SCVWIYGVFSDWRFDMPPGFL 292
           +GV + +   C+  + R + ++ E   I   D  + V  Y  F +W FD    FL
Sbjct: 10  YGVDLALVSTCVAGIRRSSGISFEVEKIHNEDVKTAVEKYLNFGEWAFDQSSAFL 64


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = -2

Query: 569  TTIRKPYSEYGNSIIRASSSLFSV*GNGCCRCMVGFFTIVLESTWKSLSTVLVALKGTL 393
            T I+KP S +     RA SSL  V G    + +      ++ES+  S    LVAL G +
Sbjct: 2064 TLIKKPVSAFN---ARALSSLAQVAGVTLNKRLPSILNALMESSLASTGDDLVALNGAI 2119


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -1

Query: 183  SILVPDVHFISHSEEIRIHPRKLPT*AAVLVDRRYI--FCTTQEIGDLFLA 37
            S+  P+V F  H++E+  +PR +PT +   +D   +    TT    D+F A
Sbjct: 1969 SVSTPEVRF--HADEVSNYPRHVPTDSHGSLDENSLGELVTTLHSLDVFFA 2017


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 26/107 (24%), Positives = 47/107 (43%)
 Frame = -2

Query: 644 TSSRRPLSAAFSNTDXKPSSLSGRTTTIRKPYSEYGNSIIRASSSLFSV*GNGCCRCMVG 465
           +SS   L+++  +T   PS+ S  ++T     S   +S   +SSS  S+  +        
Sbjct: 224 SSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSP 283

Query: 464 FFTIVLESTWKSLSTVLVALKGTLQ*PWKNITLKSATAASGSMVSSA 324
             T    S+  S S+   +   T+     + +  S+T +S SM SS+
Sbjct: 284 TSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSS 330


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = +3

Query: 6   VPLQRRSR*TKPR----RDHQSLGWCKIYIACQQVQQLK*AVFGDESGFLHYG 152
           VP+    + TKP     RD +SLG     IAC+  Q L+ +V    S F H G
Sbjct: 183 VPVINGEQKTKPTQQAIRDLRSLGITPDLIACRCKQPLEKSVIDKISLFCHVG 235


>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 555

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
 Frame = +1

Query: 4   LSLYREGAGKQSQEEITNLLG-----GAKYISPVNKY 99
           + L  E AG     ++ N LG     GAK++ P+ KY
Sbjct: 219 IRLLEEVAGNSKGPDLANKLGTVEINGAKHLGPIGKY 255


>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -1

Query: 468 RFLYDSFGVHVEIFVNCLGSVERHTPMTLEEYNIEKCDSCVWIYGVFSDWRFD--MPPGF 295
           + L   +G HVE+F+N    VE      L  +NI       ++ G FS+ RF+  M    
Sbjct: 89  KLLLRIYGPHVELFIN--RQVELENLKRLARHNIGP-----YLIGEFSNGRFEQYMESTT 141

Query: 294 LVCPLI 277
           L C  I
Sbjct: 142 LTCKTI 147


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
 Frame = -2

Query: 176 WFPTYILLAIVKKSGFIP---ENCL-LKLL 99
           +FPT +L  +V +S F+P   ENC  L+LL
Sbjct: 245 FFPTILLYPLVYQSDFVPSVSENCTPLELL 274


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -2

Query: 644 TSSRRPLSAAFSNTDXKPSSLSGRTTTIRKPYSEYGNSIIRASSSLFS 501
           T+S  P S++ +++    SSL+  +TT     S    S   ASSS+ S
Sbjct: 99  TTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITS 146


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 163 YVGNQYTLNEWFTITARQYESEIDTIDFKDTKK 261
           YVG  + +  +  +  R Y   +DTI  K T+K
Sbjct: 38  YVGGLHAIYYFPKLNPRNYHKFVDTISRKPTRK 70


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = -2

Query: 623 SAAFSNTDXKPSSL---SGRTTTIRKPYSEYGNSIIRA 519
           S    +TD KP ++   S  + TIR PY  Y   ++ +
Sbjct: 481 SLGLVHTDLKPENVLLVSNASRTIRLPYRNYSQKVLNS 518


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -2

Query: 644 TSSRRPLSAAFSNTDXKPSSLSGRTTTIRKPYSEYGNSIIRASSS 510
           TSS    S++ S++   PSS S ++++  K  S   +S   +SSS
Sbjct: 148 TSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSS 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.133    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,943,179
Number of Sequences: 5004
Number of extensions: 64794
Number of successful extensions: 212
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)