Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_I08
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2...   115   5e-27
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    25   6.6  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    25   8.7  

>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score =  115 bits (277), Expect = 5e-27
 Identities = 50/99 (50%), Positives = 72/99 (72%)
 Frame = +2

Query: 2   GVVLREGQNYNPYFPGGAISMAQVLFDEAAEYTDGTPATASQLAKDVATFLRWCSEPELD 181
           GV + +G N+NP+FPG  I+MA+ LFD+A E+ DGTPAT +Q AKDV  FL W SEPELD
Sbjct: 205 GVEVPDGMNFNPFFPGTQIAMARPLFDDAVEFEDGTPATTAQAAKDVVNFLHWASEPELD 264

Query: 182 DRRLMTIKAIGMFSMLSAVVYYLKRHKWSTLKSRKLAYK 298
            R+ M  + I + ++L+A+  + KR KW+ +K+RK+ Y+
Sbjct: 265 IRKKMGFQVITVLTILTALSMWYKRFKWTPIKNRKIFYQ 303


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -1

Query: 498 TRSPESRLLKHDEIKRREEF 439
           +RS E+ L+  DEIK++EE+
Sbjct: 928 SRSEETDLIDDDEIKQKEEY 947


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 159 HLRKVATSLASCEAVAGVPSVYSAASSNN 73
           ++R+VAT++ S  A    P +YS A S +
Sbjct: 25  NIRRVATAIGSINANLESPQLYSLAKSTS 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,474,450
Number of Sequences: 5004
Number of extensions: 49065
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)