Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_I08
(615 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0389 - 13409848-13409964,13410049-13410114,13410209-134103... 121 5e-28
01_07_0097 + 41070877-41070942,41071039-41071104,41071189-41071305 86 2e-17
05_01_0137 + 917533-917814,918080-918352 30 1.3
09_06_0141 - 21097479-21098094,21098209-21098970,21100463-21100548 30 1.7
08_01_0185 + 1558580-1558755,1558848-1559737,1559828-1559919,156... 29 2.2
04_04_1288 - 32393674-32393787,32394066-32394158,32394444-323945... 26 3.6
03_05_0862 + 28353235-28354431 29 3.9
03_05_0702 - 26934736-26935551,26937494-26937538,26938484-26938594 29 3.9
05_05_0091 + 22319411-22320901 28 5.1
05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784 28 5.1
08_02_0254 - 14879724-14880635 27 8.9
01_06_1163 - 35018862-35019623,35019702-35019951,35020871-35020929 27 8.9
01_06_0149 - 27011183-27011836 27 8.9
>05_03_0389 -
13409848-13409964,13410049-13410114,13410209-13410325,
13410822-13410893,13410979-13411258,13411528-13411730,
13412230-13412316,13412705-13412758,13413042-13413221,
13414402-13414576,13414628-13414918,13414923-13415344
Length = 687
Score = 121 bits (291), Expect = 5e-28
Identities = 54/102 (52%), Positives = 73/102 (71%)
Frame = +2
Query: 2 GVVLREGQNYNPYFPGGAISMAQVLFDEAAEYTDGTPATASQLAKDVATFLRWCSEPELD 181
GV +REG +YNPYFPGGAI+M ++L D A EY DGTPAT +Q+ KDV +FL W +EPE++
Sbjct: 586 GVQIREGLHYNPYFPGGAIAMPKMLIDGAVEYEDGTPATEAQMGKDVVSFLSWAAEPEME 645
Query: 182 DRRLMTIKAIGMFSMLSAVVYYLKRHKWSTLKSRKLAYKPVS 307
+R+LM +K I + S+ Y +R +WS LKSRKL V+
Sbjct: 646 ERKLMGVKWIFLLSLALLQAAYYRRMRWSVLKSRKLVLDVVN 687
>01_07_0097 + 41070877-41070942,41071039-41071104,41071189-41071305
Length = 82
Score = 85.8 bits (203), Expect = 2e-17
Identities = 39/82 (47%), Positives = 54/82 (65%)
Frame = +2
Query: 62 MAQVLFDEAAEYTDGTPATASQLAKDVATFLRWCSEPELDDRRLMTIKAIGMFSMLSAVV 241
M ++L D A EY DGTPAT +Q+ KDV +FL W +EPE+++R+LM +K I + S+
Sbjct: 1 MPKMLIDGAVEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFLLSLALLQA 60
Query: 242 YYLKRHKWSTLKSRKLAYKPVS 307
Y +R KWS KSRKL V+
Sbjct: 61 AYYRRMKWSVYKSRKLVLDVVN 82
>05_01_0137 + 917533-917814,918080-918352
Length = 184
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -2
Query: 170 APNTISGK*PRP*PVAKRSLAYRRCTPPP 84
AP T + P P P +R RRCTPPP
Sbjct: 60 APTTTTTTSPPPPPSFRRRSFCRRCTPPP 88
>09_06_0141 - 21097479-21098094,21098209-21098970,21100463-21100548
Length = 487
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +3
Query: 36 RISLVVPFPWRKYYLMRRRSTPTVRQRPLR 125
R++ V+P P R ++ +RRR T R+RP+R
Sbjct: 79 RVTDVIPEPDRYHWYLRRRRTAGDRRRPVR 108
>08_01_0185 +
1558580-1558755,1558848-1559737,1559828-1559919,
1560018-1560086,1560218-1560316
Length = 441
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 418 IKLIYFIEFFASLYFIMFQKP 480
IKL YFI FAS++F++ Q P
Sbjct: 151 IKLTYFIMIFASVHFVLSQLP 171
>04_04_1288 -
32393674-32393787,32394066-32394158,32394444-32394563,
32394765-32394851,32394947-32395168,32395237-32395314,
32395656-32395769,32395865-32395927,32396135-32396245,
32396338-32396559
Length = 407
Score = 25.8 bits (54), Expect(2) = 3.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 163 FGARTGRPSAHDDQGHRHVLDAQRRRVLPKTTQVVNAQ 276
FG TG HDD G R VLD+ +++ +V Q
Sbjct: 76 FGGSTGY--GHDDGGGREVLDSVFAQIVGAEAAIVRPQ 111
Score = 21.4 bits (43), Expect(2) = 3.6
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = +1
Query: 361 LFRQSFFFDRHTVSCYLFII 420
+ R FF H ++C LF +
Sbjct: 107 IVRPQFFSGTHAIACALFAL 126
>03_05_0862 + 28353235-28354431
Length = 398
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +1
Query: 136 GRGYFPEMVFGARTGRPSAHDDQGHRHVLD--AQRRRVLP 249
GRG+ P G+ G A DD+G H+LD +RR LP
Sbjct: 92 GRGFVP---LGSSRGVIVAADDRGEMHLLDPVTGKRRALP 128
>03_05_0702 - 26934736-26935551,26937494-26937538,26938484-26938594
Length = 323
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 88 GGVHRRYASDRFATG*GRGYFPEMVFGARTGRPSAHDDQGHR 213
GG RYA+DR+ +G G Y P+ G +PS++ + R
Sbjct: 199 GGGRDRYANDRYPSG-GDRYVPDRYGGPDRYQPSSYGRERER 239
>05_05_0091 + 22319411-22320901
Length = 496
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 220 EHADGLDRHEPTVVQFGLRTPSQESSHVLSQLRSGRWRTVG 98
+HA+G RHE + PS+ + V ++LR G WR G
Sbjct: 353 DHAEGRQRHEEARAELYAMLPSKLRAAVRAKLR-GWWRERG 392
>05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784
Length = 394
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 182 RPVRAPNTISGK*PRP*PVAKRSLAYRRCTPPPHQIILAPW 60
RPVRA ++ + P P P A +LA +P P PW
Sbjct: 78 RPVRASSSPAPADPMPTPAASSALAPATSSPRPASPPTPPW 118
>08_02_0254 - 14879724-14880635
Length = 303
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = +2
Query: 23 QNYNPYFPGGAISMAQVLFDEAAEYTDGTPATASQLAKDVATFLRWCSEPELDDRRLMTI 202
Q + YFP A E D S++A+ + T WC + +DR M+
Sbjct: 215 QTVSKYFPEWLYDNLNQFCGAATEGIDSRNTCISEVARKLVTIGFWCIQCTPEDRPSMS- 273
Query: 203 KAIGMF 220
+ I MF
Sbjct: 274 EVIDMF 279
>01_06_1163 - 35018862-35019623,35019702-35019951,35020871-35020929
Length = 356
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -1
Query: 111 GVPSVYSAASSNNTCAMEMAPPGKY 37
G+ +++S ASSN M++ PPG +
Sbjct: 6 GLENLFSKASSNGAIGMDIHPPGGF 30
>01_06_0149 - 27011183-27011836
Length = 217
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 85 GGGVHRRYASDRFATG*GRG 144
GGG+ RR+ RFATG G G
Sbjct: 22 GGGMSRRHGRFRFATGGGDG 41
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,028,551
Number of Sequences: 37544
Number of extensions: 326038
Number of successful extensions: 904
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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