Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_I04
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    25   4.8  
SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces ...    25   6.3  
SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces po...    25   6.3  
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe...    25   8.4  

>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = +2

Query: 266 DYTFNNDTSGLVVKWFFKSKSRLVYQ 343
           +++ + + S   ++W+   KSR+V+Q
Sbjct: 236 EFSLSGEISNAAIEWYLLEKSRVVHQ 261


>SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 246

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 266 DYTFNNDTSGLVVKWFFKSK 325
           D  FNND SGL+ K+  ++K
Sbjct: 31  DEAFNNDHSGLIHKYNIRNK 50


>SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 13/59 (22%), Positives = 30/59 (50%)
 Frame = +2

Query: 161 LLVTCFHVIRGVKITKMVVPEIIQYGVEDAVILDCDYTFNNDTSGLVVKWFFKSKSRLV 337
           ++ T F  + G+   K + PE+I+  +     ++C YT +N T   +++   +  S ++
Sbjct: 341 VIATNFSSVSGMPWIKSMEPEVIKNSISSESSVEC-YTADNLTISEILRLAKEKNSSVI 398


>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +2

Query: 74  SIVLWYGDSYEMVRRRVDRVSLTHLCTILLLVTCFHVIRGVK 199
           S +++YG   E      DRV    L  I     C+  IR +K
Sbjct: 88  SSLMFYGLMMEFFGYSFDRVGCMELAFISFSAACYFNIRSIK 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,090,511
Number of Sequences: 5004
Number of extensions: 42537
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)