Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_I04
         (497 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1264 + 35321972-35322448,35323022-35323252,35323903-353245...    29   2.1  
12_01_1112 - 11866376-11866447,11866528-11866662,11866772-118669...    28   3.6  
03_01_0083 - 667530-667837,668092-668224                               28   3.6  
04_03_0588 + 17595299-17596151,17597519-17597665,17598562-175988...    27   6.3  
02_02_0176 - 7477344-7477625                                           27   8.4  

>02_05_1264 +
           35321972-35322448,35323022-35323252,35323903-35324565,
           35324698-35324806,35324965-35325383
          Length = 632

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -3

Query: 351 TIH*YTNLDFDLKNHFTTRPDVSLLKV*SQSNITASSTPYWIISGTTIFVI 199
           T H   N DF+L   FT   DVS   +  + +   S+TP  + SG  +F +
Sbjct: 564 TEHLQKNGDFNLLLSFTVEGDVSTKSIGFEPDTQMSTTPMVLRSGMYLFFV 614


>12_01_1112 -
           11866376-11866447,11866528-11866662,11866772-11866921,
           11867263-11867338,11867426-11867559,11867655-11867747,
           11868456-11868589,11868696-11868744,11869271-11869441,
           11870291-11870452
          Length = 391

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -2

Query: 493 TQV*SPEISVFVLIMRKALCIFRGSLRRSIREVHSSPKYTYILR 362
           TQ  S E+S  V  + +  C+  GS   +IRE ++  KY ++ +
Sbjct: 331 TQYKSSELSDCVKALHRLFCVGPGSNLPAIREKYTQHKYKFVAK 374


>03_01_0083 - 667530-667837,668092-668224
          Length = 146

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 191 HV*HGNR*QAEGLCIDASTTHGQPAFAP 108
           HV HG    A+     AST HG PA++P
Sbjct: 35  HVEHGTTTSADDEYGSASTHHGMPAYSP 62


>04_03_0588 +
           17595299-17596151,17597519-17597665,17598562-17598837,
           17599108-17599805
          Length = 657

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 185 IRGVKITKMVVPEIIQYGVEDAV 253
           I+G  IT++V PE+I+  +ED +
Sbjct: 541 IKGKPITEIVAPEVIKEAIEDEI 563


>02_02_0176 - 7477344-7477625
          Length = 93

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +1

Query: 139 DASMHNPSACHLFPCYTWSQDNKNGSPGNNPIRCRRCC 252
           DA   +P  C       WS+   NG+P  + ++C   C
Sbjct: 23  DAGRCSPFDCSSSIPLPWSRGRDNGAPSKSRVKCYGLC 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,146,486
Number of Sequences: 37544
Number of extensions: 261897
Number of successful extensions: 532
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)