Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_I04
         (497 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical pr...    30   1.1  
U00049-3|AAC47059.1|  339|Caenorhabditis elegans Serpentine rece...    28   3.3  
Z48009-12|CAA88089.1| 1137|Caenorhabditis elegans Hypothetical p...    27   5.7  
Z48007-3|CAA88054.1| 1137|Caenorhabditis elegans Hypothetical pr...    27   5.7  
U28730-1|AAA68261.1|  113|Caenorhabditis elegans Hypothetical pr...    27   5.7  
U80444-2|AAB37788.1|  305|Caenorhabditis elegans Collagen protei...    27   10.0 

>Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical
           protein F47G4.8 protein.
          Length = 188

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +2

Query: 272 TFNNDTSGLVVKWFFKSKSRLVYQWIVGQKPQD 370
           T    T GL+ +W + S+ + ++ W++G +  D
Sbjct: 131 TLRMGTRGLLTRWSYNSRKKAIFGWMMGPQVTD 163


>U00049-3|AAC47059.1|  339|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 7 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 71  RSIVLWYGDSYEMVRRRVDRVSLTHLCTILLLVTCFHVI 187
           + +V WYG  + +  RRV  VSL+ L    + V+   ++
Sbjct: 175 KEVVFWYGGFFVIYHRRVGWVSLSKLHLTFIFVSISFIL 213


>Z48009-12|CAA88089.1| 1137|Caenorhabditis elegans Hypothetical
           protein AH6.1 protein.
          Length = 1137

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/67 (22%), Positives = 30/67 (44%)
 Frame = +2

Query: 179 HVIRGVKITKMVVPEIIQYGVEDAVILDCDYTFNNDTSGLVVKWFFKSKSRLVYQWIVGQ 358
           HV+    +T+M + ++     +   +   D+T+ N      V  F+K +   V+ +    
Sbjct: 411 HVVISPNLTRMPIFQLYGLNSDYDQVALVDFTYTNSVMVPNVTLFYKDEGGAVWSYYGHS 470

Query: 359 KPQDIGI 379
           +P DI I
Sbjct: 471 RPLDIPI 477


>Z48007-3|CAA88054.1| 1137|Caenorhabditis elegans Hypothetical
           protein AH6.1 protein.
          Length = 1137

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/67 (22%), Positives = 30/67 (44%)
 Frame = +2

Query: 179 HVIRGVKITKMVVPEIIQYGVEDAVILDCDYTFNNDTSGLVVKWFFKSKSRLVYQWIVGQ 358
           HV+    +T+M + ++     +   +   D+T+ N      V  F+K +   V+ +    
Sbjct: 411 HVVISPNLTRMPIFQLYGLNSDYDQVALVDFTYTNSVMVPNVTLFYKDEGGAVWSYYGHS 470

Query: 359 KPQDIGI 379
           +P DI I
Sbjct: 471 RPLDIPI 477


>U28730-1|AAA68261.1|  113|Caenorhabditis elegans Hypothetical
           protein K10B2.4 protein.
          Length = 113

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 78  SFCGMVIHMRWCEGGLTVC 134
           S CG++I M+WC     VC
Sbjct: 46  SMCGLMIRMKWCSWLALVC 64


>U80444-2|AAB37788.1|  305|Caenorhabditis elegans Collagen protein
           58 protein.
          Length = 305

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 199 DNKNGSPGNNPIRCRR 246
           D K G+PGNN +R RR
Sbjct: 214 DGKPGNPGNNGVRVRR 229


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,552,357
Number of Sequences: 27780
Number of extensions: 240655
Number of successful extensions: 733
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)