Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_I02
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    29   0.47 
SPAC1527.02 |sft2||Golgi transport protein Sft2 |Schizosaccharom...    26   2.5  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    25   5.8  

>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 28.7 bits (61), Expect = 0.47
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +1

Query: 70  KLCTILILGLIASQATCMNIRNKRQVDNSPEELEDRYALNRPNNVR 207
           K+  + +    +S A    I++   VD+  EEL ++ A NR +NV+
Sbjct: 473 KVNCLYVEAFSSSDAVLQRIQDNAVVDSPTEELSEQAARNRKSNVK 518


>SPAC1527.02 |sft2||Golgi transport protein Sft2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 321 VARSGATAAANINYLYYYFRTQRRWSNN 404
           + R+G T A + N  Y   RT   WSN+
Sbjct: 13  IQRTGETTAESTNSWYNRLRTSMPWSND 40


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +1

Query: 67  DKLCTILILGLIASQATCMNIRNKRQVDNS----PEELEDRYALNRPNNV 204
           DK CT+ +L L     TC + R+   ++ +     +EL  ++  NR  +V
Sbjct: 3   DKECTVFVLDLGKDMGTCHHGRSHSDLEWTLSYFHDELSHKFLANRKTDV 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,805,592
Number of Sequences: 5004
Number of extensions: 31992
Number of successful extensions: 47
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)