Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_I02
         (472 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0073 + 17669311-17671635                                         29   1.4  
08_02_0893 + 22327485-22327671,22327756-22328627                       27   5.8  
08_02_0482 - 17643603-17643955,17644024-17646604                       27   5.8  

>05_04_0073 + 17669311-17671635
          Length = 774

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 146 TCLLFLIFMHVA*LAIKPRIRIVHSLSILNCNNLKNE 36
           TC   L  MH+    + P++  VH LS++  +NL+ +
Sbjct: 495 TCSSLLNMMHLYSQPLLPKMHYVHPLSVMQVDNLRRQ 531


>08_02_0893 + 22327485-22327671,22327756-22328627
          Length = 352

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 302 GSQIKDRCQIRGNSSSKHQLPLLLLPDPASVE*Q 403
           G+++  R Q R  +  + + P LL+PDP +V+ Q
Sbjct: 305 GAELLRRVQQRRRADERGRQPALLVPDPQAVQRQ 338


>08_02_0482 - 17643603-17643955,17644024-17646604
          Length = 977

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 318 TVARSGATAAANINYLYYYFRTQRRWSNNDIA 413
           TVA +G        +  + +R+QRRWS  D A
Sbjct: 611 TVAVAGVILLLGAAWFAHRYRSQRRWSTEDAA 642


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,639,895
Number of Sequences: 37544
Number of extensions: 210481
Number of successful extensions: 381
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)