Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_I02
         (472 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ644022-1|ABG35128.1|  456|Homo sapiens 5-HT3 receptor subunit ...    29   6.1  
BC101185-1|AAI01186.1|  374|Homo sapiens HTR3E protein protein.        29   6.1  
BC101183-1|AAI01184.1|  471|Homo sapiens 5-hydroxytryptamine (se...    29   6.1  
BC101182-1|AAI01183.1|  471|Homo sapiens 5-hydroxytryptamine (se...    29   6.1  
AY349353-1|AAQ93477.1|  456|Homo sapiens 5-HT3c1 serotonin recep...    29   6.1  
AY349352-1|AAQ93476.1|  441|Homo sapiens 5-HT3c1 serotonin recep...    29   6.1  
AY159813-1|AAO38167.2|  471|Homo sapiens 5-hydroxytryptamine ser...    29   6.1  

>DQ644022-1|ABG35128.1|  456|Homo sapiens 5-HT3 receptor subunit E
           splice variant HTR3Ea protein.
          Length = 456

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = -3

Query: 212 SGRTLLGLFSAYLSSNSSGLLSTCLLFLIFMHVA*LAIKPRIRIVHSLSILNCNN 48
           SG  L+G++ A   S   G L   +     +HVA     P  R +HSL +L+CN+
Sbjct: 303 SGTPLIGVYFALCLSLMVGSLLETIFITHLLHVATTQPPPLPRWLHSL-LLHCNS 356


>BC101185-1|AAI01186.1|  374|Homo sapiens HTR3E protein protein.
          Length = 374

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = -3

Query: 212 SGRTLLGLFSAYLSSNSSGLLSTCLLFLIFMHVA*LAIKPRIRIVHSLSILNCNN 48
           SG  L+G++ A   S   G L   +     +HVA     P  R +HSL +L+CN+
Sbjct: 221 SGTPLIGVYFALCLSLMVGSLLETIFITHLLHVATTQPPPLPRWLHSL-LLHCNS 274


>BC101183-1|AAI01184.1|  471|Homo sapiens 5-hydroxytryptamine
           (serotonin) receptor 3, family member E protein.
          Length = 471

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = -3

Query: 212 SGRTLLGLFSAYLSSNSSGLLSTCLLFLIFMHVA*LAIKPRIRIVHSLSILNCNN 48
           SG  L+G++ A   S   G L   +     +HVA     P  R +HSL +L+CN+
Sbjct: 318 SGTPLIGVYFALCLSLMVGSLLETIFITHLLHVATTQPPPLPRWLHSL-LLHCNS 371


>BC101182-1|AAI01183.1|  471|Homo sapiens 5-hydroxytryptamine
           (serotonin) receptor 3, family member E protein.
          Length = 471

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = -3

Query: 212 SGRTLLGLFSAYLSSNSSGLLSTCLLFLIFMHVA*LAIKPRIRIVHSLSILNCNN 48
           SG  L+G++ A   S   G L   +     +HVA     P  R +HSL +L+CN+
Sbjct: 318 SGTPLIGVYFALCLSLMVGSLLETIFITHLLHVATTQPPPLPRWLHSL-LLHCNS 371


>AY349353-1|AAQ93477.1|  456|Homo sapiens 5-HT3c1 serotonin
           receptor-like protein protein.
          Length = 456

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = -3

Query: 212 SGRTLLGLFSAYLSSNSSGLLSTCLLFLIFMHVA*LAIKPRIRIVHSLSILNCNN 48
           SG  L+G++ A   S   G L   +     +HVA     P  R +HSL +L+CN+
Sbjct: 303 SGTPLIGVYFALCLSLMVGSLLETIFITHLLHVATTQPPPLPRWLHSL-LLHCNS 356


>AY349352-1|AAQ93476.1|  441|Homo sapiens 5-HT3c1 serotonin
           receptor-like protein protein.
          Length = 441

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = -3

Query: 212 SGRTLLGLFSAYLSSNSSGLLSTCLLFLIFMHVA*LAIKPRIRIVHSLSILNCNN 48
           SG  L+G++ A   S   G L   +     +HVA     P  R +HSL +L+CN+
Sbjct: 288 SGTPLIGVYFALCLSLMVGSLLETIFITHLLHVATTQPPPLPRWLHSL-LLHCNS 341


>AY159813-1|AAO38167.2|  471|Homo sapiens 5-hydroxytryptamine
           serotonin receptor 3E protein.
          Length = 471

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = -3

Query: 212 SGRTLLGLFSAYLSSNSSGLLSTCLLFLIFMHVA*LAIKPRIRIVHSLSILNCNN 48
           SG  L+G++ A   S   G L   +     +HVA     P  R +HSL +L+CN+
Sbjct: 318 SGTPLIGVYFALCLSLMVGSLLETIFITHLLHVATTQPPPLPRWLHSL-LLHCNS 371


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,768,614
Number of Sequences: 237096
Number of extensions: 1118447
Number of successful extensions: 1955
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1955
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4099895856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)