Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_I02
         (472 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78417-9|CAI70407.1|  700|Caenorhabditis elegans Hypothetical pr...    28   2.9  
Z73971-4|CAA98254.1|  205|Caenorhabditis elegans Hypothetical pr...    27   9.0  
Z46343-4|CAA86460.1|  336|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>Z78417-9|CAI70407.1|  700|Caenorhabditis elegans Hypothetical
           protein C35C5.11 protein.
          Length = 700

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 2   TSLYRATKIDHIHFLNYYNLKWISCAQFLFWV 97
           T L   T I HIHF ++  +  I C   + WV
Sbjct: 478 TFLPHKTIIPHIHFTSFQQVAVIICLSLIIWV 509


>Z73971-4|CAA98254.1|  205|Caenorhabditis elegans Hypothetical
           protein C50H2.6 protein.
          Length = 205

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 176 LSSNSSGLLSTCLLFLIFMHVA*LAIKP 93
           L   S G L T   F++F+H + +AIKP
Sbjct: 173 LRFRSKGQLKTEYFFILFIHFSQIAIKP 200


>Z46343-4|CAA86460.1|  336|Caenorhabditis elegans Hypothetical
           protein T23F11.5 protein.
          Length = 336

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -1

Query: 259 YRKDFDRGKYSESGTGLVGRC*VCLVRICPPILPGCYLPAFY 134
           Y  D   G Y      LVGR  + +  +CP + P  + P+ +
Sbjct: 72  YAADLIMGMYMSLSEILVGRLFIYVTLLCPILAPYFFTPSIF 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,943,978
Number of Sequences: 27780
Number of extensions: 180991
Number of successful extensions: 362
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)