Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_I02
         (472 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   5.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   5.0  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   6.7  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    21   8.8  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    21   8.8  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    21   8.8  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   8.8  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 363 LYYYFRTQRRWSN 401
           +YYYF TQR  +N
Sbjct: 474 VYYYFFTQRTSTN 486


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 363 LYYYFRTQRRWSN 401
           +YYYF TQR  +N
Sbjct: 474 VYYYFFTQRTSTN 486


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 421 EECMRTCPVTPEFN 462
           E+ M   P TPE+N
Sbjct: 74  EDLMNKLPTTPEYN 87


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 273 YYHRFPQSGMGP 308
           YY  FP   MGP
Sbjct: 122 YYGNFPPRSMGP 133


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 273 YYHRFPQSGMGP 308
           YY  FP   MGP
Sbjct: 122 YYGNFPPRSMGP 133


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 273 YYHRFPQSGMGP 308
           YY  FP   MGP
Sbjct: 122 YYGNFPPRSMGP 133


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 273 YYHRFPQSGMGP 308
           YY  FP   MGP
Sbjct: 355 YYGNFPPRSMGP 366


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,097
Number of Sequences: 438
Number of extensions: 2444
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)