Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_H24
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0395 + 3118480-3119097,3119699-3119989,3120063-3120114,312...    29   1.8  
06_01_1116 + 9197761-9199956                                           27   7.2  
05_06_0222 + 26510472-26511698                                         27   7.2  
11_04_0047 + 12787845-12788004,12788297-12788940                       26   9.5  
10_08_0073 + 14657400-14657696,14658168-14658229,14658241-14658886     26   9.5  
01_05_0402 + 21810906-21811831,21811875-21812472,21813119-21813391     26   9.5  

>05_01_0395 +
           3118480-3119097,3119699-3119989,3120063-3120114,
           3120395-3120546
          Length = 370

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -3

Query: 208 HCSDGWTSTYDCVSHSLANFLQFLEGIPRRRRNGPHSEDASDNQQNNFSEI 56
           HCS G  ++   V+ +   FLQ L+  PRR +  PH    SD  + + S +
Sbjct: 194 HCSSGCINSL--VAEARIKFLQLLDHPPRRDQPPPHLCLGSDRARTHPSSL 242


>06_01_1116 + 9197761-9199956
          Length = 731

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 151 SWP-ENERRSHKCWSSRRYSGPGHGFG*RKIII 246
           SWP ENER   KC     +S   H +   +III
Sbjct: 621 SWPMENERNKEKCNQEFHFSIEEHFYSSHQIII 653


>05_06_0222 + 26510472-26511698
          Length = 408

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
 Frame = +3

Query: 210 PRPRL-WL---KENNHSLTFLCIFS-CLYHHIF 293
           P P++ WL   + N H LTF C+ S C  H  F
Sbjct: 56  PHPQVPWLLLPETNEHGLTFSCVLSECRAHRFF 88


>11_04_0047 + 12787845-12788004,12788297-12788940
          Length = 267

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 277 KHEKIHKKVNE*LFSFSQSRGLGHCSDGWTSTYDC 173
           K+EK  K+++  L S   +  LG  S+  T+T DC
Sbjct: 213 KYEKEKKQMSNSLPSDGDNTNLGASSESMTATVDC 247


>10_08_0073 + 14657400-14657696,14658168-14658229,14658241-14658886
          Length = 334

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 124 RRRRNGPHSEDASDNQQN 71
           RRRR  PH ED  D  +N
Sbjct: 120 RRRRRDPHREDDGDRHRN 137


>01_05_0402 + 21810906-21811831,21811875-21812472,21813119-21813391
          Length = 598

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 97  RYGDRFGGAVESLLGIGESWPENERRSHKCWS 192
           R+    GGA+ + L IG SWP     SH  W+
Sbjct: 135 RFSHLTGGAIVNSLTIGVSWPP----SHDLWN 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,980,987
Number of Sequences: 37544
Number of extensions: 163114
Number of successful extensions: 389
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)