Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_H23
(608 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S... 163 1e-41
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch... 156 2e-39
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz... 28 1.2
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 5.0
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 26 5.0
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 8.7
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 25 8.7
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 25 8.7
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 25 8.7
>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 163 bits (397), Expect = 1e-41
Identities = 81/133 (60%), Positives = 97/133 (72%)
Frame = +2
Query: 209 VTKALKAQRKVVKGEHGNRVRKIRTSVHFRRPKTFEPPRQPKYPRKSLPKRNRMDAYNII 388
V KA AQ+ V KG H RK+RTS FRRPKT E R+PKY RKS+P +R+D Y II
Sbjct: 3 VGKAKGAQKTVQKGIHNKVARKVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKII 62
Query: 389 KYPLTSEAAMKKIEDNNTLVFIVHTSSNKHHIKAAVKKLYDIHVAKVNTLIRPDGKKKAY 568
P+ SE+AMKKIED+NTLVF VH +NK IK AVKKLY + K+NTLIRP+G KKA+
Sbjct: 63 VNPINSESAMKKIEDDNTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKKAF 122
Query: 569 VRLARDYDALDVA 607
V+L+ D DALDVA
Sbjct: 123 VKLSADADALDVA 135
>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 156 bits (379), Expect = 2e-39
Identities = 77/133 (57%), Positives = 95/133 (71%)
Frame = +2
Query: 209 VTKALKAQRKVVKGEHGNRVRKIRTSVHFRRPKTFEPPRQPKYPRKSLPKRNRMDAYNII 388
V KA AQ+ V KG H +K+RTS FRRPKT + R+PKY RKS+ R+D Y II
Sbjct: 3 VAKAKGAQKTVQKGIHNKVAKKVRTSTTFRRPKTLQLSRKPKYARKSVAHAPRLDEYKII 62
Query: 389 KYPLTSEAAMKKIEDNNTLVFIVHTSSNKHHIKAAVKKLYDIHVAKVNTLIRPDGKKKAY 568
P+ SE+AMKKIED+NTLVF VH +NK IK AV+KLY + K+NTLIRP+G KKA+
Sbjct: 63 VNPINSESAMKKIEDDNTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKAF 122
Query: 569 VRLARDYDALDVA 607
V+L+ D DALDVA
Sbjct: 123 VKLSADADALDVA 135
>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 702
Score = 27.9 bits (59), Expect = 1.2
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -3
Query: 222 RALVTGFTSCFFCPLMPVFLGLGAIFNF 139
R +V GF +C F P++ ++L + F +
Sbjct: 414 RFIVAGFLNCLFAPIVAIYLVIHNFFRY 441
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.8 bits (54), Expect = 5.0
Identities = 9/51 (17%), Positives = 25/51 (49%)
Frame = +2
Query: 368 MDAYNIIKYPLTSEAAMKKIEDNNTLVFIVHTSSNKHHIKAAVKKLYDIHV 520
+ A+++ ++ E ++ +DN T I H S ++ + A +++ +
Sbjct: 1090 LQAFDLSRFEFIKEIFLELYDDNETNASIAHQISTQNGLDATETSFFELQI 1140
>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
Rec8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 561
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +3
Query: 327 NQSILESHYPN-GIAWMPITSSNTHSLRKL 413
NQ +L G+ W+ T + HSLRKL
Sbjct: 4 NQDVLTKEKGGMGVIWLAATLGSKHSLRKL 33
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 302 PKTFEPPRQPKYPRKSLPKRN-RMDAYN 382
P+T +PP QP YP K+ K + D YN
Sbjct: 428 PQT-QPPFQPPYPSKADEKNSYHSDLYN 454
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +3
Query: 336 ILESHYPNGIAWMPITSSNTHSLRKLP 416
++E H N AW P+ ++ S+ LP
Sbjct: 1745 VVEKHTRNHAAWQPVIATILDSILNLP 1771
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 25.0 bits (52), Expect = 8.7
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +2
Query: 302 PKTFEPPRQPKYPRKSLPKRNRMDAYNIIKYP-LTSEAAMKKIEDNNTLVFIVHTSSNKH 478
P++ + RQP+ P+++ PK Y I+ P L ++ + ++ + V V +S+ +
Sbjct: 93 PQSQDMLRQPQKPKRAFPK----TPYKILDAPYLKNDFYLNLLDWGQSNVLAVGLASSIY 148
Query: 479 HIKAAVKKLYDIH 517
AA K+ +H
Sbjct: 149 LWSAASGKVVQLH 161
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2
Query: 568 VRLLLAIRPYKCVNFSN 518
VR+ LAI +KC NFSN
Sbjct: 281 VRMSLAIGLHKCKNFSN 297
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,082,488
Number of Sequences: 5004
Number of extensions: 42117
Number of successful extensions: 129
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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