Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_H23
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0407 - 24983491-24983575,24983655-24984015,24984367-249844...   179   1e-45
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855    178   3e-45
08_02_0094 + 12277756-12278574,12280314-12280418,12280487-122805...    32   0.31 
08_01_0344 + 3043824-3044123,3044260-3044314,3044810-3044985,304...    28   5.0  
11_04_0331 + 16456577-16456579,16456664-16456911,16457625-164578...    27   8.8  

>04_04_0407 -
           24983491-24983575,24983655-24984015,24984367-24984406,
           24984466-24984468
          Length = 162

 Score =  179 bits (436), Expect = 1e-45
 Identities = 87/131 (66%), Positives = 100/131 (76%)
 Frame = +2

Query: 215 KALKAQRKVVKGEHGNRVRKIRTSVHFRRPKTFEPPRQPKYPRKSLPKRNRMDAYNIIKY 394
           +ALKA + V  G      +KIRTSV F RPKT +  R PKYPR S P RN++D Y I+KY
Sbjct: 26  QALKAAKAVKSGTAKKTTKKIRTSVTFHRPKTLKKSRDPKYPRVSTPGRNKLDQYQILKY 85

Query: 395 PLTSEAAMKKIEDNNTLVFIVHTSSNKHHIKAAVKKLYDIHVAKVNTLIRPDGKKKAYVR 574
           PLT+E+AMKKIEDNNTLVFIV   ++K  IKAAVKK+YDI   KVNTLIRPDGKKKAYV+
Sbjct: 86  PLTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVK 145

Query: 575 LARDYDALDVA 607
           L  DYDALDVA
Sbjct: 146 LTPDYDALDVA 156


>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
          Length = 152

 Score =  178 bits (433), Expect = 3e-45
 Identities = 86/131 (65%), Positives = 100/131 (76%)
 Frame = +2

Query: 215 KALKAQRKVVKGEHGNRVRKIRTSVHFRRPKTFEPPRQPKYPRKSLPKRNRMDAYNIIKY 394
           +ALK  + V  G    + +KIRTSV F RPKT +  R PKYPR S P RN++D Y I+KY
Sbjct: 16  QALKVAKAVKSGSIKRKSKKIRTSVTFHRPKTLKKARDPKYPRVSAPGRNKLDQYQILKY 75

Query: 395 PLTSEAAMKKIEDNNTLVFIVHTSSNKHHIKAAVKKLYDIHVAKVNTLIRPDGKKKAYVR 574
           PLT+E+AMKKIEDNNTLVFIV   ++K  IKAAVKK+YDI   KVNTLIRPDGKKKAYV+
Sbjct: 76  PLTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVK 135

Query: 575 LARDYDALDVA 607
           L  DYDALDVA
Sbjct: 136 LTPDYDALDVA 146


>08_02_0094 +
           12277756-12278574,12280314-12280418,12280487-12280543,
           12280969-12281041,12281525-12281703,12281788-12281961,
           12282041-12282326,12282433-12282509,12282599-12282668,
           12282751-12282822,12282920-12283155,12283240-12283374,
           12283466-12283761,12284237-12284408,12284510-12284608,
           12284704-12284835,12284950-12285050,12285426-12285615,
           12285723-12285761
          Length = 1103

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 443 LVFIVHTSSNKHHIKAAVKKLYDIHVAKVNTLIRP 547
           L+  +H     H IK  +KK YD H +K   +I+P
Sbjct: 300 LILRMHRKEVVHEIKRHLKKSYDFHTSKCTLIIKP 334


>08_01_0344 +
           3043824-3044123,3044260-3044314,3044810-3044985,
           3045083-3045283,3045383-3045642,3045909-3046222,
           3046399-3046622,3047046-3047398,3047709-3047826,
           3047875-3048133,3048252-3049729
          Length = 1245

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 203 KPVTKALKAQRKVVKGEHGNRVRKIRTSVHFRRPKTFEPPRQPK 334
           K V K +K +  +   +HG+ + K+   + FRR     P RQ K
Sbjct: 351 KEVFKVIKRKPSISYEKHGSVLGKVHGEIKFRRVHFAYPSRQDK 394


>11_04_0331 +
           16456577-16456579,16456664-16456911,16457625-16457812,
           16458293-16458489,16458579-16458768,16458865-16459084,
           16459169-16459376,16459508-16459642,16459725-16459916,
           16459999-16460171,16460266-16460454,16460539-16460655,
           16460734-16460818,16460900-16461052,16461135-16461260,
           16461391-16461573,16461823-16461984,16462098-16462214
          Length = 961

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 13/60 (21%)
 Frame = +2

Query: 293 FRRPK----TFEPPRQPKYPRK---------SLPKRNRMDAYNIIKYPLTSEAAMKKIED 433
           FRRPK     F PPR+P+ PR          S P R++   Y+    P+T +      ED
Sbjct: 154 FRRPKRHRANFRPPREPRTPRSDDDGDGATPSSPGRSQRGMYSGGDVPMTDQTDDDPYED 213


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,357,710
Number of Sequences: 37544
Number of extensions: 264151
Number of successful extensions: 718
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)