Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_H22
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    26   5.6  
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    26   5.6  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    26   5.6  
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet...    25   7.4  
SPAC630.06c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.4  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    25   9.7  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 627 CTQLSGTYNKSIALLTXGVLHDDQSQWVETRS 532
           C++L G  + S+ ++  GV  +D   W+E  S
Sbjct: 217 CSELCGVLHSSMPIVVQGVSLEDFLAWLEENS 248


>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = +3

Query: 153 GDD-ERESGRFRPLYRSTHSIQPQRD---QDYRPSHRPKVRVRHSECAQQRSGQR 305
           GD  +R+   +R  YR   S +   D   +DY P+ R     RH E  ++ S +R
Sbjct: 26  GDQRDRDYREYRRNYRDERSSRRYEDSQRRDYSPARRRDRYERHRESVREESPRR 80



 Score = 25.0 bits (52), Expect = 9.7
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +3

Query: 150 SGDDERESGRFRPLYRSTHSIQPQRDQDYRP---SHRPKVRVRHSECAQQR 293
           SG+  R   + R  Y S+ S   QRD+DYR    ++R +   R  E +Q+R
Sbjct: 6   SGEHRRNYAQGRN-YESSRSRGDQRDRDYREYRRNYRDERSSRRYEDSQRR 55


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +1

Query: 274 QNVHNNEVVKDLPLPRYLWKVAKNSSRAERLSCAAALVALITCVGLIVYFTINAKDTSGT 453
           +NV    +VKD+   +Y+W   K + +   +S  A LVA       + ++  +  DT  T
Sbjct: 92  KNVTGQMIVKDML--QYIWPKGKTNLKVRVVSALALLVAAKILNVQVPFYFKSIIDTMNT 149

Query: 454 SI 459
           ++
Sbjct: 150 TL 151


>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
           acetyltransferase subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/41 (21%), Positives = 22/41 (53%)
 Frame = -3

Query: 591 ALLTXGVLHDDQSQWVETRSSVCIIGLLCEPHVPAYVPFMG 469
           A L   ++   +++ V T S + ++ ++C+PH   ++   G
Sbjct: 63  AYLKESLMRKLRAKPVRTASGIAVVAVMCKPHRCPHIAMTG 103


>SPAC630.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 188

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +3

Query: 51  CTRLLKVVSVKNVERK*RRTGTRAEQPVEHRLLSGDDER 167
           C +L KVVS+K  E K RR  ++ ++ +  +LL   +E+
Sbjct: 125 CQKLHKVVSIKKEESKHRRRPSK-KRRIRMKLLREKEEQ 162


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 181 SALCTAVPTVSNLNVTKTTGLHIGPKFV 264
           +A  T +PT+SN+N T    LH    +V
Sbjct: 270 TASLTNIPTISNVNATNFHPLHSQQPYV 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,678,460
Number of Sequences: 5004
Number of extensions: 52575
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)