Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_H21
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.08 |||Sjogren's syndrome/scleroderma autoantigen 1 famil...    28   0.90 
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    25   8.4  

>SPBC3B8.08 |||Sjogren's syndrome/scleroderma autoantigen 1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 153

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 5/105 (4%)
 Frame = +1

Query: 205 DVLTVKCASSPRIPAQLDTLQTVARIRHVKRSLKSKAHTRSQQCPELQPL-----NHIPX 369
           D +  KC   P +  + + +  V+ I  +K S  S+  T ++  P++  L     N    
Sbjct: 23  DTICPKCEKVPMMRLRDNPMFCVSCINDLKESDASEHVTVAESAPKIASLPISKTNDAER 82

Query: 370 XXXXXXXXXMNHRNRHHMAFLSVVAPLMETIPLTVDTRLVEIHLT 504
                    M      H A LSV + L+  +   +D RL   H T
Sbjct: 83  SQQTTKAPVMERTESSHQATLSVYSRLISELESQLDDRLPLPHNT 127


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 49  KNLKFNYSLPVHRIILHLNKDKRW 120
           K+LKF  +   H +I+  N++K W
Sbjct: 33  KSLKFGENFTDHMLIMKWNREKGW 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,298,744
Number of Sequences: 5004
Number of extensions: 44476
Number of successful extensions: 108
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)