Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_H19
         (570 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    40   2e-05
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   2.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   4.9  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   8.6  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   8.6  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 39.9 bits (89), Expect = 2e-05
 Identities = 27/110 (24%), Positives = 50/110 (45%)
 Frame = +2

Query: 98  KVALVXXXXXXXXXXXXXQFTKEGAQVAIVGRNVTKLEKVAAKCAANGKKPLIIKADLSN 277
           +VALV                 +G +V  +   V K++ +  +  +   K + ++ DLSN
Sbjct: 8   EVALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKMKTLVEELKSKPGKLVPLQCDLSN 67

Query: 278 QDEVSTIVSKTIDAFGKIDILVNNAGMIKLGSLLEGDLLEAYDTVMATNL 427
           Q+++  ++       G IDIL+NNA  I +   L+ D +  +  +   NL
Sbjct: 68  QNDILKVIEWVEKNLGAIDILINNA-TINIDVTLQNDEVLDWKKIFDINL 116


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = -1

Query: 291 LTSSWLDKSALMINGFLPLAAHFAATFSSF-VTF 193
           L   W++ S +          HFA  FSS  +TF
Sbjct: 192 LVEKWVNSSEIFYTTSQQYYGHFAGNFSSISITF 225


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/36 (22%), Positives = 20/36 (55%)
 Frame = +2

Query: 173 QVAIVGRNVTKLEKVAAKCAANGKKPLIIKADLSNQ 280
           ++ +  +   + E    +C A G+KP+ I  +++N+
Sbjct: 780 EIKLKNQTARRGEPAVLQCEAQGEKPIGILWNMNNK 815


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 315 SIVLLTIVLTSSWLDKSA 262
           +IVL+T+ L + WL+ S+
Sbjct: 254 TIVLMTMTLMTLWLEPSS 271


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 311 IDAFGKIDILVNNAGMIKLGSLLEGD 388
           ID +GK   +    G+  LG+++EG+
Sbjct: 346 IDEYGKKIDIYTPEGLNMLGNVIEGN 371


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 389 LLEAYDTVMATNLRAVIQLTNLATPHIVEAKGNIINISSNLA 514
           L +A D    +  +++ +  NL    +  +KG+ INIS  +A
Sbjct: 206 LNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIA 247


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,973
Number of Sequences: 438
Number of extensions: 2321
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)