Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_H18
         (491 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0979 - 8270980-8271654,8271984-8272088                           31   0.66 
07_03_0739 - 21096684-21096742,21096822-21097076,21097206-210984...    27   6.2  
10_01_0020 + 239026-239514                                             27   8.2  
05_03_0276 - 11485123-11485136,11486549-11487557                       27   8.2  
01_06_0066 - 26113761-26114683,26115031-26115106,26115204-261154...    27   8.2  

>07_01_0979 - 8270980-8271654,8271984-8272088
          Length = 259

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -1

Query: 179 RWSQQRSCILQHRCCHCRNGR-WW 111
           RW ++RS ++    CHC+  + WW
Sbjct: 232 RWQRERSVVIPRSSCHCQRVKHWW 255


>07_03_0739 -
           21096684-21096742,21096822-21097076,21097206-21098498,
           21098616-21098688
          Length = 559

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 355 DELGEVATAGLETFL-VSGVGHGVGDTVKADVRELAADGDSFVFSTN 218
           +E   +A AG    + VS  GH  G  +++ V E  ADGDS     N
Sbjct: 261 NERASLAQAGGRVPIRVSESGHPSGGRIRSGVTEANADGDSVATKAN 307


>10_01_0020 + 239026-239514
          Length = 162

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = -1

Query: 179 RWSQQRSCILQHRCCHCRNG--RWW 111
           RW ++RS ++    CHC+    RW+
Sbjct: 79  RWQRERSVVIPRSSCHCQRVKLRWF 103


>05_03_0276 - 11485123-11485136,11486549-11487557
          Length = 340

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -1

Query: 473 NVQDNPT-XQGDQSTGNKSSCKVPDQFRQRLVF 378
           N  +NP+   GD +T N  SC + D   Q   F
Sbjct: 292 NTDNNPSNTNGDDTTNNHGSCPISDHSNQACNF 324


>01_06_0066 -
           26113761-26114683,26115031-26115106,26115204-26115401,
           26115829-26116014,26116292-26116447,26116486-26116731,
           26116832-26117149,26117235-26117292,26117472-26117837,
           26119300-26119604
          Length = 943

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -2

Query: 304 GVGHGVGDTVKADVRELAADGDSFVFSTNVLQLTG 200
           G GHG GD   A  REL+ DG  +  S+ +L   G
Sbjct: 48  GAGHGGGDP--ALERELSRDGSHYSISSAILPSLG 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,303,704
Number of Sequences: 37544
Number of extensions: 167007
Number of successful extensions: 490
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)