Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_H18
         (491 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    57   9e-11
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   5.4  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   9.4  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 57.2 bits (132), Expect = 9e-11
 Identities = 33/82 (40%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
 Frame = +2

Query: 104 KDATIVRYDNDNIGVEG-YSYAVETSDGKQAQETGQLKNVGTENEAISVRGQFSYVGLDG 280
           KDA I     + +  +G Y    ETS+G   QE+GQ K V  E   +S +G  SY   DG
Sbjct: 25  KDAVITSQQLE-VNFDGNYINNFETSNGISHQESGQPKQVDNETPVVS-QGSDSYTAPDG 82

Query: 281 VTYTVTYTADEEGFKPSGGHLP 346
              ++TY ADE GF+  G H+P
Sbjct: 83  QQVSITYVADENGFQVQGSHIP 104


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 257  FSYVGLDGVTYTVTYTADEE 316
            F+ VG DGV  TVTY   EE
Sbjct: 1193 FTRVG-DGVPTTVTYCQTEE 1211


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 257  FSYVGLDGVTYTVTYTADEE 316
            F+ VG DGV  TVTY   EE
Sbjct: 1189 FTRVG-DGVPTTVTYCQTEE 1207


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 140 IGVEGYSYAVETSDGKQAQETGQL 211
           IG +G+S     SDG +A+  G L
Sbjct: 373 IGSDGWSARGLVSDGNEAEVEGTL 396


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -2

Query: 346 GEVATAGLETFLVSGVGHGVGDTV 275
           G + T      L+ G   G+GDT+
Sbjct: 131 GNIQTVXNNWLLLEGHSIGIGDTI 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,219
Number of Sequences: 438
Number of extensions: 1487
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)